Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN47_RS09630 Genome accession   NZ_CP141709
Coordinates   1899581..1900585 (+) Length   334 a.a.
NCBI ID   WP_407350315.1    Uniprot ID   -
Organism   Lactococcus garvieae strain VC13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894581..1905585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN47_RS09610 (VNN47_09575) - 1894970..1895674 (+) 705 WP_407350314.1 Bax inhibitor-1/YccA family protein -
  VNN47_RS09615 (VNN47_09580) - 1895727..1896551 (-) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -
  VNN47_RS09620 (VNN47_09585) - 1896907..1898328 (+) 1422 WP_014024380.1 NCS2 family permease -
  VNN47_RS09625 (VNN47_09590) - 1898405..1899505 (+) 1101 WP_242803127.1 YdcF family protein -
  VNN47_RS09630 (VNN47_09595) coiA 1899581..1900585 (+) 1005 WP_407350315.1 competence protein CoiA Machinery gene
  VNN47_RS09635 (VNN47_09600) pepF 1900569..1902374 (+) 1806 WP_407350316.1 oligoendopeptidase F Regulator
  VNN47_RS09640 (VNN47_09605) - 1902374..1903057 (+) 684 WP_004258974.1 O-methyltransferase -
  VNN47_RS09645 (VNN47_09610) - 1903155..1904063 (+) 909 WP_265150336.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39883.79 Da        Isoelectric Point: 8.6103

>NTDB_id=918687 VNN47_RS09630 WP_407350315.1 1899581..1900585(+) (coiA) [Lactococcus garvieae strain VC13]
MLIALDKDGKTINLLDSTSINGPFYCPACKTPLRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLSLYQWFKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGRDLWLKNTLSSLQKNLLYYSAERGF
YFWELDWKRKKLRLKSLIYQDLKGRPIYLTEEFDFFQESLLDLLRQPFRKGKNLSLDVPKQEELQLFVQKQLYYQVPKWL
KVQEKYYEQGRNVLDLNWKKSYWSPPGLNLLTFDFADDTRESFFQVDISLEKYYHSFYESFQLQEHETLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918687 VNN47_RS09630 WP_407350315.1 1899581..1900585(+) (coiA) [Lactococcus garvieae strain VC13]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTTCTTGACAGCACTTCAATTAATGGCCCTTTTTATTGCCC
GGCCTGTAAGACGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCCTTACAAAATTGTG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGCTTATATCAGTGGTTTAAGGAAAAAGAGAAA
GTAGAGCTGGAAAAGTACGTGCCAGAGATTAAGCAAACAGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCACCCCTCTCTTTGCAACGCTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGGTATTATGTACTTTGGCTTC
AAGGGAGGGACTTGTGGCTTAAGAATACTCTATCTTCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGGAATTGGACTGGAAAAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTAACGGAAGAGTTTGATTTCTTTCAAGAAAGTCTCTTAGACCTCTTACGCCAGCCCTTTCGAAAAGGAAAAAATC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTGTTTGTTCAGAAACAATTGTATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATGTGCTGGACCTTAACTGGAAGAAGAGTTACTGGAGTCCGCCGGG
CTTGAACTTGTTGACCTTTGACTTTGCTGATGATACGCGAGAAAGCTTTTTTCAAGTAGACATTTCCTTGGAAAAATATT
ACCACAGTTTCTACGAAAGTTTTCAGTTACAAGAACATGAAACACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.534

97.605

0.503
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

40.549

98.204

0.398