Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   VNN47_RS09450 Genome accession   NZ_CP141709
Coordinates   1863494..1864189 (+) Length   231 a.a.
NCBI ID   WP_004259096.1    Uniprot ID   -
Organism   Lactococcus garvieae strain VC13     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1858494..1869189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN47_RS09425 (VNN47_09390) - 1858727..1859428 (+) 702 WP_004259114.1 DeoR/GlpR family DNA-binding transcription regulator -
  VNN47_RS09430 (VNN47_09395) pfkB 1859425..1860351 (+) 927 WP_004259111.1 1-phosphofructokinase -
  VNN47_RS09435 (VNN47_09400) - 1860366..1862270 (+) 1905 WP_014024348.1 fructose-specific PTS transporter subunit EIIC -
  VNN47_RS09440 (VNN47_09405) - 1862382..1862624 (+) 243 WP_003135050.1 type B 50S ribosomal protein L31 -
  VNN47_RS09445 (VNN47_09410) - 1862841..1863392 (+) 552 WP_407350300.1 YceD family protein -
  VNN47_RS09450 (VNN47_09415) covR 1863494..1864189 (+) 696 WP_004259096.1 response regulator transcription factor Regulator
  VNN47_RS09455 (VNN47_09420) covS 1864278..1865768 (+) 1491 WP_407350301.1 ATP-binding protein Regulator
  VNN47_RS09460 (VNN47_09425) - 1866165..1867736 (+) 1572 WP_407350302.1 ABC transporter permease subunit -
  VNN47_RS09465 (VNN47_09430) - 1867737..1868474 (+) 738 WP_014024353.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26979.74 Da        Isoelectric Point: 5.4730

>NTDB_id=918685 VNN47_RS09450 WP_004259096.1 1863494..1864189(+) (covR) [Lactococcus garvieae strain VC13]
MNSSKRILIIEDDKNIARFVSLELEHEGYQTAVQGNGRKGLEEAMSKDYDLILLDLMLPELDGFEVARRLRREKDTHIIM
MTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRSLFRREDHIHTIEKSDNTSFRDLVIDKTNRTVHRGKKVIDLTRR
EYDLLLTLMQNVGDVVTREYLVSEVWGYEEGTETNVVDVYIRYLRNKIDVEGRESYIQTVRGMGYVMRDRK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=918685 VNN47_RS09450 WP_004259096.1 1863494..1864189(+) (covR) [Lactococcus garvieae strain VC13]
ATGAATTCATCTAAACGTATTTTGATTATCGAAGACGATAAAAACATTGCGAGATTTGTTTCACTTGAGCTTGAACACGA
AGGATACCAAACTGCGGTTCAAGGCAATGGTCGTAAAGGTCTTGAAGAAGCAATGTCAAAAGATTATGATTTGATTTTGC
TTGACCTAATGCTCCCAGAGCTTGATGGCTTTGAAGTTGCACGACGCTTACGCCGTGAGAAAGATACACATATTATTATG
ATGACTGCACGTGATTCGACAATGGACCGTGTAGCAGGTCTTGATATTGGCGCAGATGACTATATTACAAAACCATTTGC
TATTGAAGAATTGTTAGCGCGTGTCCGCTCACTCTTCCGTCGTGAAGATCATATCCACACGATTGAAAAGTCCGACAATA
CTTCATTCCGTGATTTGGTAATTGATAAGACCAACCGTACTGTACACCGTGGAAAAAAAGTTATTGACCTTACACGTCGT
GAGTACGATTTGCTTTTGACACTGATGCAAAATGTAGGTGATGTCGTAACACGTGAATACTTGGTTTCTGAAGTATGGGG
TTACGAAGAAGGTACAGAAACAAACGTTGTGGACGTTTATATCCGTTATCTGCGTAACAAAATTGACGTGGAGGGCCGTG
AAAGCTACATCCAAACGGTTCGTGGTATGGGATATGTCATGCGTGACCGCAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

87.773

99.134

0.87
  covR Streptococcus salivarius strain HSISS4

66.81

100

0.671
  vicR Streptococcus mutans UA159

43.723

100

0.437
  micA Streptococcus pneumoniae Cp1015

42.424

100

0.424