Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VNN37_RS01710 Genome accession   NZ_CP141707
Coordinates   333915..336125 (-) Length   736 a.a.
NCBI ID   WP_339000398.1    Uniprot ID   -
Organism   Lactococcus garvieae strain M21102102     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328915..341125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS01680 (VNN37_01680) atpA 329169..330677 (-) 1509 WP_004259170.1 F0F1 ATP synthase subunit alpha -
  VNN37_RS01685 (VNN37_01685) - 330743..331270 (-) 528 WP_014024339.1 F0F1 ATP synthase subunit delta -
  VNN37_RS01690 (VNN37_01690) atpF 331285..331791 (-) 507 WP_004259173.1 F0F1 ATP synthase subunit B -
  VNN37_RS01695 (VNN37_01695) atpB 331805..332518 (-) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  VNN37_RS01700 (VNN37_01700) - 332573..332788 (-) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  VNN37_RS01705 (VNN37_01705) - 332984..333760 (-) 777 WP_339000397.1 alpha/beta hydrolase family protein -
  VNN37_RS01710 (VNN37_01710) comEC 333915..336125 (-) 2211 WP_339000398.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VNN37_RS01715 (VNN37_01715) - 336145..336795 (-) 651 WP_339000400.1 helix-hairpin-helix domain-containing protein -
  VNN37_RS01720 (VNN37_01720) - 336853..338028 (-) 1176 WP_004259189.1 SLC13 family permease -
  VNN37_RS01725 (VNN37_01725) - 338193..339749 (-) 1557 WP_339000401.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 85095.75 Da        Isoelectric Point: 9.6632

>NTDB_id=918612 VNN37_RS01710 WP_339000398.1 333915..336125(-) (comEC) [Lactococcus garvieae strain M21102102]
MKQKFSLISFVYLLVFVYFLIFSFSWPLLILSLFSFFIAFYRQYYSVLVLLLCFSLFLLMIKKETEVQERKQPEKISKIT
PYMDTLQVNGSRLSFRGEVNGNDFQAFYTLTSEKEKEYFKKLAVKGTFYLEGTLEIPEEQRNFSGFDYRKYLRTQGIHRL
LKIEKIYGFEEKQDFDLRLVRRKAILWTQKHFPSPMSSYMTGLLFGWLDKDFEEMGELYTSLGIIHLFALSGMQVNFFIE
LLRNILLRVGLSQKLVFFIQIPFSIFYAFLTGLSLSILRALLQKNIPLKNSSDRFSVTFLLLMVFSPYFLLTTGGQLTML
YSFLITFFSRKFKELKGLKKSLLDSTVLAVGVLPLLIFHFHSFQPLSIILTLLFSLIFDFLLLPGLLFVFLLSLFGTDLT
LFNPFFIVLESIVRWVGDLFDQPIVFGKPNLIFLLLLFILSGLALDFYKKRNWNLSIIIILFLLFFFVKNPKHPSITMVD
VGQGDSILLQDSWNSQNILIDTGGRLKIRADEQWKEGIYKSNAENTLLPYLRARGVSKIDVLIVTHPDEDHIGDLESVAQ
KVPIKNVYVSASALEKKSFAKKLSRLNSQIHIVQEGDKLPIFNSYLWFLTTGVEGKSDNDNSLVTFGEFYGKKFLFTGDL
EEEGEVQLQEEYPHLEVDVLKVGHHGSKTSSKEAFLEAINPKLALISAGKNNRYKHPNQETLQQFAARGIKIYRTDQQGA
IRLLYKKGSWDIQTVK

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=918612 VNN37_RS01710 WP_339000398.1 333915..336125(-) (comEC) [Lactococcus garvieae strain M21102102]
ATGAAACAAAAATTTTCGCTTATCTCTTTCGTTTATCTCTTAGTCTTTGTTTATTTTCTTATTTTTAGTTTTTCATGGCC
TTTACTTATTCTTAGTCTCTTTAGTTTCTTCATCGCTTTTTATCGTCAATACTATAGTGTGTTAGTTCTTTTACTGTGCT
TTAGTTTATTCTTACTCATGATAAAAAAAGAAACGGAAGTACAAGAAAGAAAGCAACCAGAAAAAATTTCGAAAATTACC
CCTTATATGGATACTCTTCAAGTAAATGGAAGCAGGCTCAGTTTCAGAGGAGAAGTGAACGGCAACGACTTCCAAGCTTT
TTACACCTTGACCTCGGAAAAAGAAAAAGAATACTTCAAAAAACTTGCGGTGAAGGGGACTTTTTACCTTGAAGGCACTT
TGGAGATTCCAGAAGAGCAAAGAAATTTTTCAGGTTTTGATTACAGAAAGTATTTAAGGACTCAAGGGATTCATCGTCTT
CTTAAAATAGAAAAAATTTATGGCTTTGAAGAAAAACAGGACTTTGATTTACGGCTGGTACGCCGAAAAGCCATTCTTTG
GACTCAGAAACATTTCCCTTCTCCTATGTCGTCCTATATGACAGGGCTTCTTTTTGGGTGGTTGGATAAAGACTTTGAAG
AAATGGGGGAGCTTTACACCAGTCTTGGCATTATCCATTTATTTGCGCTGTCAGGCATGCAGGTGAATTTTTTTATTGAA
CTTCTCCGAAATATTTTACTGCGGGTTGGCTTATCACAGAAGTTAGTCTTTTTTATCCAAATTCCCTTTTCGATATTTTA
TGCATTTCTTACAGGCTTATCTCTTTCAATCTTACGCGCGCTTCTTCAAAAAAATATCCCCCTTAAAAATTCAAGCGATA
GATTTTCTGTAACTTTTCTTCTTTTAATGGTGTTCAGTCCTTATTTCCTGCTGACAACAGGCGGACAACTCACGATGCTT
TATTCTTTCTTAATCACATTTTTTTCACGAAAGTTCAAAGAACTAAAAGGATTAAAAAAATCGTTACTTGATTCTACCGT
CCTAGCTGTTGGGGTTCTTCCGCTTTTGATTTTTCACTTCCATAGTTTTCAGCCATTATCGATTATCTTGACTTTATTAT
TTAGTCTGATTTTTGATTTTTTACTTCTGCCAGGTTTACTTTTTGTTTTTCTTCTTTCTTTATTCGGTACTGATCTCACG
TTATTTAATCCTTTTTTTATTGTTTTAGAATCAATAGTAAGATGGGTGGGCGATTTATTTGACCAGCCGATTGTCTTTGG
CAAACCCAACCTTATTTTTTTACTTTTACTTTTTATACTGAGTGGACTTGCCCTCGATTTTTATAAAAAAAGGAACTGGA
ACTTGAGCATAATAATTATCCTTTTCTTGCTTTTTTTCTTTGTTAAGAATCCTAAACACCCAAGCATTACAATGGTAGAT
GTGGGACAAGGGGACAGTATTCTTTTACAAGACAGTTGGAACAGCCAAAACATCCTCATCGATACGGGCGGTAGATTAAA
AATAAGAGCTGATGAGCAGTGGAAGGAGGGAATCTATAAGAGCAATGCCGAAAATACACTTCTGCCTTATCTGAGAGCGC
GTGGCGTGAGTAAGATAGATGTTCTGATTGTGACACATCCAGATGAGGATCATATTGGAGACCTGGAGAGTGTAGCTCAG
AAAGTACCAATAAAAAATGTTTATGTGTCAGCTTCTGCATTGGAGAAGAAAAGCTTTGCTAAAAAACTCAGCCGTTTAAA
CAGTCAGATTCACATTGTGCAGGAGGGGGACAAGCTCCCCATCTTTAACAGTTATCTCTGGTTTTTAACGACAGGCGTTG
AAGGGAAAAGTGATAATGATAATTCTTTAGTGACATTTGGTGAATTTTATGGGAAGAAATTTCTTTTTACAGGTGACTTA
GAAGAAGAGGGAGAGGTGCAACTCCAAGAAGAATATCCCCATTTAGAGGTGGATGTCCTAAAAGTTGGACATCATGGCAG
TAAAACTTCTTCAAAGGAGGCTTTTTTAGAAGCAATCAATCCTAAGCTCGCTCTTATTTCGGCTGGAAAGAATAATCGAT
ATAAACATCCCAATCAAGAAACGCTCCAACAATTCGCTGCACGAGGCATAAAAATTTATCGTACAGACCAGCAAGGGGCA
ATCCGTCTCCTTTATAAAAAAGGCAGTTGGGACATTCAAACAGTTAAGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(203-445)

Domain of unknown function (DUF4131) (DUF4131)

(24-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(481-689)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

53.07

99.592

0.529
  comEC/celB Streptococcus mitis SK321

45.248

100

0.459
  comEC/celB Streptococcus mitis NCTC 12261

43.817

100

0.443
  comEC/celB Streptococcus pneumoniae TIGR4

43.472

100

0.439
  comEC/celB Streptococcus pneumoniae Rx1

43.069

100

0.435
  comEC/celB Streptococcus pneumoniae D39

43.069

100

0.435
  comEC/celB Streptococcus pneumoniae R6

43.069

100

0.435