Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   VNN37_RS01585 Genome accession   NZ_CP141707
Coordinates   311779..312474 (-) Length   231 a.a.
NCBI ID   WP_004259096.1    Uniprot ID   -
Organism   Lactococcus garvieae strain M21102102     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 306779..317474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS01570 (VNN37_01570) - 307494..308231 (-) 738 WP_242803169.1 amino acid ABC transporter ATP-binding protein -
  VNN37_RS01575 (VNN37_01575) - 308232..309803 (-) 1572 WP_014024352.1 ABC transporter permease subunit -
  VNN37_RS01580 (VNN37_01580) covS 310200..311690 (-) 1491 WP_014024351.1 HAMP domain-containing histidine kinase Regulator
  VNN37_RS01585 (VNN37_01585) covR 311779..312474 (-) 696 WP_004259096.1 response regulator transcription factor Regulator
  VNN37_RS01590 (VNN37_01590) - 312576..313127 (-) 552 WP_339000388.1 YceD family protein -
  VNN37_RS01595 (VNN37_01595) - 313344..313586 (-) 243 WP_003135050.1 type B 50S ribosomal protein L31 -
  VNN37_RS01600 (VNN37_01600) - 313698..315602 (-) 1905 WP_014024348.1 fructose-specific PTS transporter subunit EIIC -
  VNN37_RS01605 (VNN37_01605) pfkB 315617..316543 (-) 927 WP_004259111.1 1-phosphofructokinase -
  VNN37_RS01610 (VNN37_01610) - 316540..317241 (-) 702 WP_339000390.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26979.74 Da        Isoelectric Point: 5.4730

>NTDB_id=918610 VNN37_RS01585 WP_004259096.1 311779..312474(-) (covR) [Lactococcus garvieae strain M21102102]
MNSSKRILIIEDDKNIARFVSLELEHEGYQTAVQGNGRKGLEEAMSKDYDLILLDLMLPELDGFEVARRLRREKDTHIIM
MTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRSLFRREDHIHTIEKSDNTSFRDLVIDKTNRTVHRGKKVIDLTRR
EYDLLLTLMQNVGDVVTREYLVSEVWGYEEGTETNVVDVYIRYLRNKIDVEGRESYIQTVRGMGYVMRDRK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=918610 VNN37_RS01585 WP_004259096.1 311779..312474(-) (covR) [Lactococcus garvieae strain M21102102]
ATGAATTCATCTAAACGTATTTTGATTATCGAAGACGATAAAAACATTGCGAGATTTGTTTCACTTGAGCTTGAACACGA
AGGATACCAAACTGCGGTTCAAGGCAATGGTCGTAAAGGTCTTGAAGAAGCAATGTCAAAAGATTATGATTTGATTTTGC
TTGACTTAATGCTCCCAGAGCTTGATGGCTTTGAGGTTGCACGACGCTTACGCCGTGAGAAAGATACACATATTATTATG
ATGACTGCACGTGATTCGACAATGGACCGTGTAGCAGGACTTGATATTGGCGCAGATGACTATATTACAAAACCATTTGC
TATTGAAGAATTGCTAGCGCGTGTCCGCTCACTCTTCCGTCGTGAAGATCATATCCACACGATTGAAAAGTCAGACAATA
CTTCATTCCGTGATTTGGTAATTGATAAGACCAACCGTACTGTACACCGTGGAAAAAAAGTTATTGACCTTACACGTCGT
GAGTACGATTTGCTTTTGACACTGATGCAAAATGTAGGTGATGTCGTAACACGTGAATACTTGGTTTCTGAAGTATGGGG
TTACGAAGAAGGTACAGAAACAAACGTTGTGGACGTTTATATCCGTTATCTGCGTAACAAAATTGACGTGGAGGGCCGTG
AAAGCTATATCCAAACGGTTCGTGGTATGGGATATGTCATGCGTGACCGCAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

87.773

99.134

0.87
  covR Streptococcus salivarius strain HSISS4

66.81

100

0.671
  vicR Streptococcus mutans UA159

43.723

100

0.437
  micA Streptococcus pneumoniae Cp1015

42.424

100

0.424