Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN37_RS01405 Genome accession   NZ_CP141707
Coordinates   275403..276407 (-) Length   334 a.a.
NCBI ID   WP_339000355.1    Uniprot ID   -
Organism   Lactococcus garvieae strain M21102102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 270403..281407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS01390 (VNN37_01390) - 271925..272833 (-) 909 WP_017370843.1 peptidyl-prolyl cis-trans isomerase -
  VNN37_RS01395 (VNN37_01395) - 272931..273614 (-) 684 WP_004258974.1 O-methyltransferase -
  VNN37_RS01400 (VNN37_01400) pepF 273614..275419 (-) 1806 WP_339000354.1 oligoendopeptidase F Regulator
  VNN37_RS01405 (VNN37_01405) coiA 275403..276407 (-) 1005 WP_339000355.1 competence protein CoiA family protein Machinery gene
  VNN37_RS01410 (VNN37_01410) - 276484..277584 (-) 1101 WP_339000357.1 YdcF family protein -
  VNN37_RS01415 (VNN37_01415) - 277661..279082 (-) 1422 WP_014024380.1 NCS2 family permease -
  VNN37_RS01420 (VNN37_01420) - 279419..280243 (+) 825 WP_339000359.1 HAD family hydrolase -
  VNN37_RS01425 (VNN37_01425) - 280296..281000 (-) 705 WP_004258993.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39924.75 Da        Isoelectric Point: 8.3694

>NTDB_id=918608 VNN37_RS01405 WP_339000355.1 275403..276407(-) (coiA) [Lactococcus garvieae strain M21102102]
MLIALDKDGKTINLLDSTSINGPFYCPACKTALRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLTLYQWFKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGRDLWLKNTLSSLQKNLLYYSAERGF
YFWELDWNRKKLRLKSLIYQDLKERPIYLTEEFDFFQESLLDLLRQPFRKGKNLSLDVPKQEELQLFVQKQLYYQVPKWL
KVQEKYYEQGRNVLDLNWKKSYWSPPGLNLLTFDFADDTRESFSQVDISLEKYYHSFYESFQLQEHERLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918608 VNN37_RS01405 WP_339000355.1 275403..276407(-) (coiA) [Lactococcus garvieae strain M21102102]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTTCTTGACAGCACTTCAATTAATGGCCCTTTTTATTGCCC
GGCCTGTAAGACGGCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCCTTACAAAATTGTG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTAGGCTTAAAACTCACCTTATATCAGTGGTTTAAGGAAAAAGAGAAG
GTAGAGCTGGAAAAGTACGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCACCCCTATCTTTGCAACGCTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGGTATTATGTACTTTGGCTTC
AAGGGAGGGACTTGTGGCTTAAAAATACGCTATCTTCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGGAATTGGACTGGAACAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGAACGACCGAT
TTATCTAACGGAAGAGTTTGACTTCTTTCAAGAAAGTCTCCTAGACCTCTTACGTCAGCCCTTTCGAAAAGGAAAAAATC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTGTTTGTTCAGAAACAATTGTATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATGTGCTGGACCTTAACTGGAAGAAGAGTTACTGGAGTCCTCCGGG
CTTGAACTTGTTGACCTTTGACTTTGCCGATGATACGCGAGAAAGTTTTTCTCAAGTAGACATTTCCTTGGAAAAATATT
ACCACAGTTTCTACGAAAGTTTTCAGTTACAAGAACATGAAAGACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.227

97.605

0.5
  coiA Streptococcus pneumoniae Rx1

40.549

98.204

0.398
  coiA Streptococcus pneumoniae D39

40.549

98.204

0.398
  coiA Streptococcus pneumoniae R6

40.549

98.204

0.398
  coiA Streptococcus pneumoniae TIGR4

40.244

98.204

0.395
  coiA Streptococcus mitis NCTC 12261

40.244

98.204

0.395