Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN29_RS08960 Genome accession   NZ_CP141686
Coordinates   1810874..1811878 (+) Length   334 a.a.
NCBI ID   WP_206888327.1    Uniprot ID   -
Organism   Lactococcus petauri strain UCD-FS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805874..1816878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN29_RS08940 (VNN29_08940) - 1806249..1806953 (+) 705 WP_206888324.1 Bax inhibitor-1/YccA family protein -
  VNN29_RS08945 (VNN29_08945) - 1807011..1807835 (-) 825 WP_019293090.1 Cof-type HAD-IIB family hydrolase -
  VNN29_RS08950 (VNN29_08950) - 1808199..1809620 (+) 1422 WP_019292048.1 NCS2 family permease -
  VNN29_RS08955 (VNN29_08955) - 1809698..1810798 (+) 1101 WP_019293088.1 YdcF family protein -
  VNN29_RS08960 (VNN29_08960) coiA 1810874..1811878 (+) 1005 WP_206888327.1 competence protein CoiA family protein Machinery gene
  VNN29_RS08965 (VNN29_08965) pepF 1811862..1813667 (+) 1806 WP_165719444.1 oligoendopeptidase F Regulator
  VNN29_RS08970 (VNN29_08970) - 1813667..1814350 (+) 684 WP_019292044.1 O-methyltransferase -
  VNN29_RS08975 (VNN29_08975) - 1814448..1815356 (+) 909 WP_019293085.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39780.62 Da        Isoelectric Point: 8.6076

>NTDB_id=918060 VNN29_RS08960 WP_206888327.1 1810874..1811878(+) (coiA) [Lactococcus petauri strain UCD-FS1]
MLIALDKDGKTINLLDNSSISGPFYCPACKSPLRLKKGKIKIPHFAHISVKNCDSWSENESAQHLGLKLSLYQWFKKKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKNNLSSLQKNLLYYSAVRGF
YFWELDWNRKKLRLKSLVYQDLKGRPIYLTEEFDFFQESLLELLRQPFREGEDLSLDAPKQEELQLFVQKQLYYQVPKWL
KMQEKYYEQGKNLLDLNWNKSYWSPPGLNLLTFDFSDDTPESFFQVDTPLEKYYHSFYESFQLQEHEKLHTPSFYAIIKD
KNKVKNGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918060 VNN29_RS08960 WP_206888327.1 1810874..1811878(+) (coiA) [Lactococcus petauri strain UCD-FS1]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTCCTTGACAATTCTTCAATTAGTGGCCCTTTTTATTGCCC
AGCCTGTAAGTCGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCTCACATATCCGTAAAAAATTGTG
ACTCTTGGAGCGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGTTTGTATCAATGGTTTAAGAAAAAAGAGAAA
GTTGAGTTGGAAAAGTATGTGCCAGAAATTAAGCAAACGGCTGATTTGTTAGTAAATGATAAACTTGCTATTGAAATACA
GTGTTCGCCGCTTTCTTTGCAACGTTTAGAAGAGAGAACGGTAAGTTACAAAGAAAAAGGATATTATGTCCTTTGGCTTC
AAGGAAGGGACTTATGGCTTAAGAATAACCTATCATCTTTGCAGAAAAATTTGCTCTATTATTCAGCAGTGAGAGGTTTT
TATTTTTGGGAATTAGACTGGAACAGAAAAAAACTACGGTTGAAATCATTGGTTTATCAAGATTTGAAAGGACGACCGAT
TTATCTTACTGAAGAGTTTGACTTCTTTCAAGAGAGTCTCTTAGAGCTCTTACGCCAACCCTTTCGAGAAGGAGAAGATC
TTAGTTTAGATGCTCCAAAACAGGAAGAGTTACAGTTGTTTGTTCAGAAACAACTGTATTATCAAGTGCCAAAATGGCTT
AAAATGCAAGAAAAATATTATGAACAAGGAAAAAATTTGCTAGACCTCAATTGGAATAAGAGCTACTGGAGTCCTCCAGG
CTTAAACTTATTGACCTTTGACTTTTCCGATGATACGCCAGAAAGCTTTTTTCAAGTAGATACTCCCTTGGAAAAATATT
ATCACAGCTTCTATGAAAGTTTTCAGTTACAAGAACACGAAAAACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.524

98.204

0.506
  coiA Streptococcus pneumoniae Rx1

40.549

98.204

0.398
  coiA Streptococcus pneumoniae D39

40.549

98.204

0.398
  coiA Streptococcus pneumoniae R6

40.549

98.204

0.398
  coiA Streptococcus pneumoniae TIGR4

40.549

98.204

0.398
  coiA Streptococcus mitis NCTC 12261

39.634

98.204

0.389