Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   AB0R82_RS14165 Genome accession   NZ_CP160220
Coordinates   2723859..2724554 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2718859..2729554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS14140 (AB0R82_14140) minD 2719795..2720601 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  AB0R82_RS14145 (AB0R82_14145) minC 2720603..2721283 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  AB0R82_RS14150 (AB0R82_14150) mreD 2721336..2721854 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  AB0R82_RS14155 (AB0R82_14155) mreC 2721851..2722723 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  AB0R82_RS14160 (AB0R82_14160) mreB 2722754..2723767 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AB0R82_RS14165 (AB0R82_14165) ysxA/radC 2723859..2724554 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  AB0R82_RS14170 (AB0R82_14170) maf 2724591..2725160 (-) 570 WP_366591617.1 Maf family nucleotide pyrophosphatase -
  AB0R82_RS14175 (AB0R82_14175) spoIIB 2725313..2726311 (-) 999 WP_088467304.1 stage II sporulation protein SpoIIB -
  AB0R82_RS14180 (AB0R82_14180) comC 2726445..2727191 (-) 747 WP_088467305.1 A24 family peptidase Machinery gene
  AB0R82_RS14185 (AB0R82_14185) folC 2727331..2728623 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=917635 AB0R82_RS14165 WP_014480455.1 2723859..2724554(-) (ysxA/radC) [Bacillus subtilis strain JM553]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=917635 AB0R82_RS14165 WP_014480455.1 2723859..2724554(-) (ysxA/radC) [Bacillus subtilis strain JM553]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCTAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424