Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | U9I39_RS03775 | Genome accession | NZ_CP141589 |
| Coordinates | 773329..773766 (+) | Length | 145 a.a. |
| NCBI ID | WP_277848044.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain S22825 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 764966..806049 | 773329..773766 | within | 0 |
Gene organization within MGE regions
Location: 764966..806049
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U9I39_RS03705 (U9I39_03705) | - | 764966..766093 (-) | 1128 | WP_260182650.1 | site-specific integrase | - |
| U9I39_RS03710 (U9I39_03710) | - | 766202..766465 (-) | 264 | WP_015764315.1 | hypothetical protein | - |
| U9I39_RS03715 (U9I39_03715) | - | 766563..766973 (-) | 411 | WP_225361932.1 | hypothetical protein | - |
| U9I39_RS03720 (U9I39_03720) | - | 767588..768433 (-) | 846 | WP_081262708.1 | SHOCT domain-containing protein | - |
| U9I39_RS03725 (U9I39_03725) | - | 768493..769158 (-) | 666 | WP_345939202.1 | XRE family transcriptional regulator | - |
| U9I39_RS03730 (U9I39_03730) | - | 769327..769593 (+) | 267 | WP_095593593.1 | helix-turn-helix transcriptional regulator | - |
| U9I39_RS03735 (U9I39_03735) | - | 769594..770298 (+) | 705 | WP_346222692.1 | phage regulatory protein/antirepressor Ant | - |
| U9I39_RS03740 (U9I39_03740) | - | 770299..770556 (+) | 258 | WP_346222693.1 | hypothetical protein | - |
| U9I39_RS03745 (U9I39_03745) | - | 770637..770993 (+) | 357 | WP_316069659.1 | DUF771 domain-containing protein | - |
| U9I39_RS03750 (U9I39_03750) | - | 771078..771230 (+) | 153 | WP_260183811.1 | hypothetical protein | - |
| U9I39_RS03755 (U9I39_03755) | - | 771235..771438 (+) | 204 | WP_277848038.1 | hypothetical protein | - |
| U9I39_RS03760 (U9I39_03760) | - | 771456..771947 (+) | 492 | WP_277848039.1 | siphovirus Gp157 family protein | - |
| U9I39_RS03765 (U9I39_03765) | - | 771958..772668 (+) | 711 | WP_223602867.1 | ERF family protein | - |
| U9I39_RS03770 (U9I39_03770) | - | 772646..773314 (+) | 669 | WP_277848043.1 | putative HNHc nuclease | - |
| U9I39_RS03775 (U9I39_03775) | ssb | 773329..773766 (+) | 438 | WP_277848044.1 | single-stranded DNA-binding protein | Machinery gene |
| U9I39_RS03780 (U9I39_03780) | - | 773783..774613 (+) | 831 | WP_277848045.1 | helix-turn-helix domain-containing protein | - |
| U9I39_RS03785 (U9I39_03785) | - | 774610..775872 (+) | 1263 | WP_346222694.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| U9I39_RS03790 (U9I39_03790) | - | 775874..776218 (+) | 345 | WP_260182640.1 | hypothetical protein | - |
| U9I39_RS03795 (U9I39_03795) | - | 776260..776661 (+) | 402 | WP_346222695.1 | RusA family crossover junction endodeoxyribonuclease | - |
| U9I39_RS03800 (U9I39_03800) | - | 776677..777153 (+) | 477 | WP_346222696.1 | alcohol dehydrogenase | - |
| U9I39_RS03805 (U9I39_03805) | - | 777168..777353 (+) | 186 | WP_049152787.1 | hypothetical protein | - |
| U9I39_RS03810 (U9I39_03810) | - | 777350..777856 (+) | 507 | WP_049152786.1 | DUF1642 domain-containing protein | - |
| U9I39_RS03815 (U9I39_03815) | - | 777846..778190 (+) | 345 | WP_003585025.1 | hypothetical protein | - |
| U9I39_RS03820 (U9I39_03820) | - | 778177..778551 (+) | 375 | WP_346222697.1 | hypothetical protein | - |
| U9I39_RS03825 (U9I39_03825) | - | 778548..778991 (+) | 444 | WP_021354235.1 | YopX family protein | - |
| U9I39_RS03830 (U9I39_03830) | - | 779609..780052 (+) | 444 | WP_048487187.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| U9I39_RS03835 (U9I39_03835) | - | 780364..781296 (+) | 933 | WP_047676130.1 | hypothetical protein | - |
| U9I39_RS03840 (U9I39_03840) | - | 781839..782987 (+) | 1149 | WP_260182632.1 | GcrA family cell cycle regulator | - |
| U9I39_RS03845 (U9I39_03845) | - | 782980..783516 (+) | 537 | WP_260182631.1 | NUMOD4 domain-containing protein | - |
| U9I39_RS03850 (U9I39_03850) | - | 783520..783849 (+) | 330 | WP_346222698.1 | ribonucleoside-diphosphate reductase | - |
| U9I39_RS03855 (U9I39_03855) | - | 783855..784205 (+) | 351 | Protein_731 | hypothetical protein | - |
| U9I39_RS03860 (U9I39_03860) | - | 784238..784402 (+) | 165 | WP_346222699.1 | hypothetical protein | - |
| U9I39_RS03865 (U9I39_03865) | - | 784408..784896 (+) | 489 | WP_346222700.1 | HNH endonuclease | - |
| U9I39_RS03870 (U9I39_03870) | - | 785031..785504 (+) | 474 | WP_346222701.1 | phage terminase small subunit P27 family | - |
| U9I39_RS03875 (U9I39_03875) | - | 785501..787393 (+) | 1893 | WP_346222702.1 | terminase TerL endonuclease subunit | - |
| U9I39_RS03880 (U9I39_03880) | - | 787380..787589 (+) | 210 | WP_346222704.1 | hypothetical protein | - |
| U9I39_RS03885 (U9I39_03885) | - | 787589..788776 (+) | 1188 | WP_346222705.1 | phage portal protein | - |
| U9I39_RS03890 (U9I39_03890) | - | 788754..789470 (+) | 717 | WP_346222706.1 | head maturation protease, ClpP-related | - |
| U9I39_RS03895 (U9I39_03895) | - | 789470..790711 (+) | 1242 | WP_346222707.1 | phage major capsid protein | - |
| U9I39_RS03900 (U9I39_03900) | - | 790783..791091 (+) | 309 | WP_257586249.1 | hypothetical protein | - |
| U9I39_RS03905 (U9I39_03905) | - | 791081..791425 (+) | 345 | WP_257586469.1 | phage head closure protein | - |
| U9I39_RS03910 (U9I39_03910) | - | 791428..791847 (+) | 420 | WP_346222709.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| U9I39_RS03915 (U9I39_03915) | - | 791844..792215 (+) | 372 | WP_346222710.1 | DUF806 family protein | - |
| U9I39_RS03920 (U9I39_03920) | - | 792227..792859 (+) | 633 | WP_346222711.1 | phage tail protein | - |
| U9I39_RS03925 (U9I39_03925) | - | 793018..793368 (+) | 351 | WP_064554643.1 | phage tail tube assembly chaperone | - |
| U9I39_RS03930 (U9I39_03930) | - | 793346..793576 (+) | 231 | WP_021354705.1 | hypothetical protein | - |
| U9I39_RS03935 (U9I39_03935) | - | 793549..798150 (+) | 4602 | WP_346222712.1 | tape measure protein | - |
| U9I39_RS03940 (U9I39_03940) | - | 798151..800082 (+) | 1932 | WP_346222713.1 | distal tail protein Dit | - |
| U9I39_RS03945 (U9I39_03945) | - | 800083..802602 (+) | 2520 | WP_346222714.1 | phage tail protein | - |
| U9I39_RS03950 (U9I39_03950) | - | 802618..802947 (+) | 330 | WP_049179694.1 | hypothetical protein | - |
| U9I39_RS03955 (U9I39_03955) | - | 802944..803087 (+) | 144 | WP_005688592.1 | XkdX family protein | - |
| U9I39_RS03960 (U9I39_03960) | - | 803119..803418 (+) | 300 | WP_012491468.1 | hypothetical protein | - |
| U9I39_RS03965 (U9I39_03965) | - | 803433..803846 (+) | 414 | WP_020752188.1 | phage holin | - |
| U9I39_RS03970 (U9I39_03970) | - | 803857..805041 (+) | 1185 | WP_346222715.1 | GH25 family lysozyme | - |
| U9I39_RS03975 (U9I39_03975) | - | 805145..805657 (+) | 513 | WP_260182614.1 | type II toxin-antitoxin system antitoxin SocA domain-containing protein | - |
| U9I39_RS03980 (U9I39_03980) | - | 805654..806049 (+) | 396 | WP_260182613.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15840.42 Da Isoelectric Point: 5.7222
>NTDB_id=917546 U9I39_RS03775 WP_277848044.1 773329..773766(+) (ssb) [Lacticaseibacillus rhamnosus strain S22825]
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAKGQKVFVTEVIVENFALLEPRQASQDGQQRSANNPAAASQGNGFSNNGQQVDVSDDDLPF
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAKGQKVFVTEVIVENFALLEPRQASQDGQQRSANNPAAASQGNGFSNNGQQVDVSDDDLPF
Nucleotide
Download Length: 438 bp
>NTDB_id=917546 U9I39_RS03775 WP_277848044.1 773329..773766(+) (ssb) [Lacticaseibacillus rhamnosus strain S22825]
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGACCTTCGCTATACGCAAAGCGGAACAGCGGTTGG
TTCATTTACGATTGCTGTTGATCGCCAATTTCGCAGCGCAAATGGGGAACGCGAAACTGACTTCATCAATTGTGCAATCT
GGCGTAAGTCTGCTGAGAATTTTGCCAACTTCACGCACAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGAAAGGGCAGAAAGTATTCGTGACCGAGGTAATCGTTGAGAATTTTGCTTTGCTTGAGCCACGGCA
AGCGTCTCAGGATGGTCAACAACGATCGGCTAATAACCCAGCGGCCGCAAGCCAAGGAAACGGTTTTTCTAACAATGGCC
AGCAAGTCGATGTCAGCGATGATGATCTTCCATTCTAG
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGACCTTCGCTATACGCAAAGCGGAACAGCGGTTGG
TTCATTTACGATTGCTGTTGATCGCCAATTTCGCAGCGCAAATGGGGAACGCGAAACTGACTTCATCAATTGTGCAATCT
GGCGTAAGTCTGCTGAGAATTTTGCCAACTTCACGCACAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGAAAGGGCAGAAAGTATTCGTGACCGAGGTAATCGTTGAGAATTTTGCTTTGCTTGAGCCACGGCA
AGCGTCTCAGGATGGTCAACAACGATCGGCTAATAACCCAGCGGCCGCAAGCCAAGGAAACGGTTTTTCTAACAATGGCC
AGCAAGTCGATGTCAGCGATGATGATCTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.294 |
100 |
0.648 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.93 |
100 |
0.545 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
38.621 |
100 |
0.386 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.83 |
73.103 |
0.386 |