Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV19_RS14520 Genome accession   NZ_AP025463
Coordinates   3250546..3251193 (+) Length   215 a.a.
NCBI ID   WP_065676193.1    Uniprot ID   A0A1C3JCZ6
Organism   Vibrio celticus strain CECT 7224     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3241226..3249557 3250546..3251193 flank 989


Gene organization within MGE regions


Location: 3241226..3251193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS14485 - 3241226..3243439 (-) 2214 WP_083994289.1 AAA family ATPase -
  OCV19_RS14490 - 3243430..3243897 (-) 468 WP_065676179.1 hypothetical protein -
  OCV19_RS14495 - 3243909..3244346 (-) 438 WP_065676180.1 hypothetical protein -
  OCV19_RS14500 - 3244343..3246511 (-) 2169 WP_206377636.1 hypothetical protein -
  OCV19_RS14505 - 3246508..3248076 (-) 1569 WP_083994290.1 site-specific integrase -
  OCV19_RS14510 - 3248076..3249557 (-) 1482 WP_065676181.1 site-specific integrase -
  OCV19_RS14515 ssb 3249710..3250267 (-) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  OCV19_RS14520 qstR 3250546..3251193 (+) 648 WP_065676193.1 LuxR C-terminal-related transcriptional regulator Regulator

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25265.39 Da        Isoelectric Point: 9.4706

>NTDB_id=91712 OCV19_RS14520 WP_065676193.1 3250546..3251193(+) (qstR) [Vibrio celticus strain CECT 7224]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDELMLVDRKQSNRILLVDYREVPQLRIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGENWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=91712 OCV19_RS14520 WP_065676193.1 3250546..3251193(+) (qstR) [Vibrio celticus strain CECT 7224]
ATGAGAAAATCAAGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCAAACGATACCTATCTACATGTAAAAGAGAT
AGAAAAGCATTTATCTATTATTCTCTACAAAATGACACCCGACGAATTAATGCTAGTTGATAGAAAGCAGAGTAACCGGA
TCTTGCTCGTCGATTACAGAGAGGTACCACAACTACGGATTATTTGTCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTCCCCCAGCAACTTCCAACCTCAGAGCTTCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTCATCGATGGTGAGAACTGGTTACCGAGGAAGGTAACCA
ATCAACTGCTGTTTTATTATCGTAATATGGTCAATACCAACACAACACCAACCAACGTTGATTTAACCATTCGCGAGATT
CAGGTAATTCGCTGTCTTCAGTCAGGGTCATCAAACACACAAATCGCTGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTTTATCAGATATTCCGTAAGTTGGCGGTCAAAAATAGGGTTCAAGCCATTGCTTGGGCCAACCAGAACCTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3JCZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.953

100

0.54
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488

Multiple sequence alignment