Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV19_RS14515 Genome accession   NZ_AP025463
Coordinates   3249710..3250267 (-) Length   185 a.a.
NCBI ID   WP_017061342.1    Uniprot ID   -
Organism   Vibrio celticus strain CECT 7224     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3241226..3249557 3249710..3250267 flank 153


Gene organization within MGE regions


Location: 3241226..3250267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS14485 - 3241226..3243439 (-) 2214 WP_083994289.1 AAA family ATPase -
  OCV19_RS14490 - 3243430..3243897 (-) 468 WP_065676179.1 hypothetical protein -
  OCV19_RS14495 - 3243909..3244346 (-) 438 WP_065676180.1 hypothetical protein -
  OCV19_RS14500 - 3244343..3246511 (-) 2169 WP_206377636.1 hypothetical protein -
  OCV19_RS14505 - 3246508..3248076 (-) 1569 WP_083994290.1 site-specific integrase -
  OCV19_RS14510 - 3248076..3249557 (-) 1482 WP_065676181.1 site-specific integrase -
  OCV19_RS14515 ssb 3249710..3250267 (-) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20400.52 Da        Isoelectric Point: 5.2358

>NTDB_id=91711 OCV19_RS14515 WP_017061342.1 3249710..3250267(-) (ssb) [Vibrio celticus strain CECT 7224]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=91711 OCV19_RS14515 WP_017061342.1 3249710..3250267(-) (ssb) [Vibrio celticus strain CECT 7224]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTTGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACACGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTGCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAGCAACAATACAGTGCTCCCGCTCAACAGCAGCCAAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCAATGGATTTTGATGATGACATCCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.822
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.584
  ssb Neisseria meningitidis MC58

47.568

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.476

Multiple sequence alignment