Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QZD84_RS14645 Genome accession   NZ_CP141290
Coordinates   3097025..3097555 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain BM26A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3092025..3102555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS14630 - 3092468..3093976 (-) 1509 WP_308386311.1 hypothetical protein -
  QZD84_RS14635 - 3093969..3095522 (-) 1554 WP_083150754.1 site-specific integrase -
  QZD84_RS14640 - 3095528..3096916 (-) 1389 WP_308386308.1 site-specific integrase -
  QZD84_RS14645 ssb 3097025..3097555 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  QZD84_RS14650 qstR 3097834..3098478 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  QZD84_RS14655 galU 3098736..3099608 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=916988 QZD84_RS14645 WP_005466625.1 3097025..3097555(-) (ssb) [Vibrio parahaemolyticus strain BM26A]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=916988 QZD84_RS14645 WP_005466625.1 3097025..3097555(-) (ssb) [Vibrio parahaemolyticus strain BM26A]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483