Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OCV19_RS06445 Genome accession   NZ_AP025463
Coordinates   1390362..1390943 (+) Length   193 a.a.
NCBI ID   WP_017060401.1    Uniprot ID   A0A1B9QDI1
Organism   Vibrio celticus strain CECT 7224     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385362..1395943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS06425 panP 1385661..1387304 (-) 1644 WP_065675160.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  OCV19_RS06430 - 1387423..1387950 (-) 528 WP_065675161.1 hypothetical protein -
  OCV19_RS06435 - 1388124..1389029 (-) 906 WP_017071961.1 lysine exporter LysO family protein -
  OCV19_RS06440 - 1389084..1390004 (-) 921 WP_065675162.1 HDOD domain-containing protein -
  OCV19_RS06445 tfoX 1390362..1390943 (+) 582 WP_017060401.1 TfoX/Sxy family DNA transformation protein Regulator
  OCV19_RS06450 - 1391105..1391647 (-) 543 WP_048609214.1 hypothetical protein -
  OCV19_RS06455 - 1391935..1392432 (-) 498 WP_065675163.1 response regulator -
  OCV19_RS06460 - 1392425..1394368 (-) 1944 WP_065675164.1 ATP-binding protein -
  OCV19_RS06465 - 1394552..1395814 (+) 1263 WP_065675165.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22203.56 Da        Isoelectric Point: 8.7998

>NTDB_id=91698 OCV19_RS06445 WP_017060401.1 1390362..1390943(+) (tfoX) [Vibrio celticus strain CECT 7224]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVREAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=91698 OCV19_RS06445 WP_017060401.1 1390362..1390943(+) (tfoX) [Vibrio celticus strain CECT 7224]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTCGGAGGTATTGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTATTGAGTGAAGGTTGTTTATTCATTAGAGGTGGAAAATCATTAGATAAAAAAC
TGACCGATCTTGATTGTGAAAAGTATCGTCATGTAAAGAAGCAGACAACAGCAACCGTAAACTATTACGACATTACGGAT
CTGTTTACCTGTGAACATCCTGAATTGGATAGTATTATTCGTACTTCAATCGATAATTCAATTCAGCAGCGTAGCTTCAA
GAAGTCATCAGCTAGCCGTAGATTAAGAGATCTACCAAACATGCAGCTTACGTTAGAGCGCATGGTTAAAAAGGCGGGTG
TGGATGATGTTTCAATGTTTATGCAGTTGGGCGCACCTGAAGTGTTTAATAAGGTTCGCGAAGCGTACGGAAACGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGTGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTACTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9QDI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.093

100

0.741
  tfoX Vibrio cholerae strain A1552

74.093

100

0.741
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

57.895

98.446

0.57

Multiple sequence alignment