Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U4960_RS14200 Genome accession   NZ_CP141285
Coordinates   2867035..2867568 (-) Length   177 a.a.
NCBI ID   WP_324261276.1    Uniprot ID   -
Organism   Altererythrobacter sp. H2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2862035..2872568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4960_RS14165 (U4960_14165) - 2862631..2863029 (-) 399 WP_324261270.1 GFA family protein -
  U4960_RS14170 (U4960_14170) - 2863045..2863443 (-) 399 WP_324261271.1 ACT domain-containing protein -
  U4960_RS14175 (U4960_14175) hslU 2863440..2864741 (-) 1302 WP_324261272.1 ATP-dependent protease ATPase subunit HslU -
  U4960_RS14180 (U4960_14180) hslV 2864757..2865317 (-) 561 WP_324261273.1 ATP-dependent protease subunit HslV -
  U4960_RS14185 (U4960_14185) - 2865375..2865815 (-) 441 WP_324263118.1 outer membrane protein assembly factor BamE -
  U4960_RS14190 (U4960_14190) - 2866010..2866516 (+) 507 WP_324261274.1 ubiquinol-cytochrome C chaperone family protein -
  U4960_RS14195 (U4960_14195) - 2866513..2867034 (+) 522 WP_324261275.1 DUF177 domain-containing protein -
  U4960_RS14200 (U4960_14200) ssb 2867035..2867568 (-) 534 WP_324261276.1 single-stranded DNA-binding protein Machinery gene
  U4960_RS14205 (U4960_14205) feoB 2867604..2869442 (-) 1839 WP_324261277.1 ferrous iron transporter B -
  U4960_RS14210 (U4960_14210) - 2869439..2869678 (-) 240 WP_324261278.1 FeoA family protein -
  U4960_RS14215 (U4960_14215) - 2869739..2870398 (-) 660 WP_324261279.1 COQ9 family protein -
  U4960_RS14220 (U4960_14220) - 2870401..2871045 (-) 645 WP_324261280.1 ankyrin repeat domain-containing protein -
  U4960_RS14225 (U4960_14225) - 2871111..2871710 (+) 600 WP_324261281.1 SCO family protein -
  U4960_RS14230 (U4960_14230) - 2871698..2872156 (+) 459 WP_324261282.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18183.81 Da        Isoelectric Point: 5.2437

>NTDB_id=916906 U4960_RS14200 WP_324261276.1 2867035..2867568(-) (ssb) [Altererythrobacter sp. H2]
MAGSLNKVMLIGNLGADPEIRSFQNGGKVCNLRIATSETWKDKNSGERQERTEWHTVAIFNEGLAGVAERFLRKGSKVYI
EGQLQTRKWQDQQGNDRYSTEVVLRGPNSVMTMLDGAQGGAGGGAGGGGGQRSGGYGGGAPGGQSGGGQGGGGWNQGGGA
ASGGGSNYDDLDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=916906 U4960_RS14200 WP_324261276.1 2867035..2867568(-) (ssb) [Altererythrobacter sp. H2]
ATGGCCGGTTCACTCAACAAGGTCATGCTGATCGGCAATCTCGGTGCCGATCCGGAAATCCGCAGCTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACCAGTGAAACGTGGAAGGACAAGAATTCCGGGGAGCGGCAGGAACGCACCGAAT
GGCACACCGTCGCGATCTTCAATGAAGGTCTGGCGGGTGTGGCCGAGCGGTTCCTGCGCAAGGGCAGCAAGGTTTATATC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGCAGGGCAACGACCGCTATTCGACCGAAGTGGTCCTGCGCGGTCC
CAACTCGGTCATGACCATGCTTGATGGCGCCCAGGGTGGTGCCGGTGGCGGAGCCGGCGGTGGTGGCGGCCAGCGCAGCG
GTGGCTACGGCGGCGGCGCTCCGGGTGGGCAGTCGGGCGGCGGCCAGGGTGGCGGCGGCTGGAACCAGGGCGGCGGCGCA
GCCTCGGGCGGCGGCTCCAACTACGACGATCTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.549

100

0.52
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.469
  ssb Neisseria meningitidis MC58

39.665

100

0.401
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.401