Detailed information NTG0916733

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U8518_RS21595
• Genome accession: NZ_CP141267
• Coordinates: 4703572..4704444 (-)
• Length: 290 a.a.
• NCBI ID: WP_101149981.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain MaAh001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4698572..4709444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U8518_RS21570 (U8518_21570)	-	4700307..4701492 (+)	1186	Protein_4169	tetratricopeptide repeat protein	-
U8518_RS21575 (U8518_21575)	mutT	4701501..4701914 (+)	414	WP_180807567.1	8-oxo-dGTP diphosphatase MutT	-
U8518_RS21580 (U8518_21580)	yacG	4701975..4702169 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
U8518_RS21585 (U8518_21585)	zapD	4702179..4702901 (-)	723	WP_180807569.1	cell division protein ZapD	-
U8518_RS21590 (U8518_21590)	coaE	4702939..4703553 (-)	615	WP_101149980.1	dephospho-CoA kinase	-
U8518_RS21595 (U8518_21595)	pilD	4703572..4704444 (-)	873	WP_101149981.1	prepilin peptidase	Machinery gene
U8518_RS21600 (U8518_21600)	pilC	4704467..4705708 (-)	1242	WP_101149982.1	type II secretion system F family protein	Machinery gene
U8518_RS21605 (U8518_21605)	pilB	4705824..4707539 (-)	1716	WP_180807586.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
U8518_RS21610 (U8518_21610)	-	4707530..4707970 (-)	441	WP_043160631.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
U8518_RS21615 (U8518_21615)	nadC	4708293..4709150 (-)	858	WP_101149983.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32518.76 Da
• Isoelectric Point: 6.4781

>NTDB_id=916733 U8518_RS21595 WP_101149981.1 4703572..4704444(-) (pilD) [Aeromonas hydrophila strain MaAh001]
MLLITDVFHSQPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCCECQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLTDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLALAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=916733 U8518_RS21595 WP_101149981.1 4703572..4704444(-) (pilD) [Aeromonas hydrophila strain MaAh001]
ATGTTGCTGATCACTGACGTTTTCCACAGCCAGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCTCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGTTGGCTCTGGCTCAAGGGGCGCTGCTGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCCTTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATACCCACCGGGCTGGGGCT
TGCTGGCTGCCTTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGACAGGGGGATTTGCGCCGCTGACCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTACTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAACTGCTAGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCTTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGACCCTATCT
GGCCCTCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.976	98.966	0.603
pilD	Vibrio campbellii strain DS40M4	55.052	98.966	0.545
pilD	Acinetobacter baumannii D1279779	55.224	92.414	0.51
pilD	Acinetobacter nosocomialis M2	55.224	92.414	0.51
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462