Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   U3649_RS17470 Genome accession   NZ_CP141262
Coordinates   4005940..4006998 (-) Length   352 a.a.
NCBI ID   WP_407352562.1    Uniprot ID   -
Organism   Luteimonas sp. R10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4000940..4011998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3649_RS17445 (U3649_17345) - 4000979..4001977 (-) 999 WP_407352557.1 AAA family ATPase -
  U3649_RS17450 (U3649_17350) - 4002138..4004078 (-) 1941 WP_407352558.1 type IV pilus secretin PilQ -
  U3649_RS17455 (U3649_17355) - 4004093..4004626 (-) 534 WP_407352559.1 pilus assembly protein PilP -
  U3649_RS17460 (U3649_17360) - 4004634..4005287 (-) 654 WP_407352560.1 type 4a pilus biogenesis protein PilO -
  U3649_RS17465 (U3649_17365) - 4005284..4005940 (-) 657 WP_407352561.1 PilN domain-containing protein -
  U3649_RS17470 (U3649_17370) pilM 4005940..4006998 (-) 1059 WP_407352562.1 pilus assembly protein PilM Machinery gene
  U3649_RS17475 (U3649_17375) - 4007224..4009734 (+) 2511 WP_407352563.1 penicillin-binding protein 1A -
  U3649_RS17480 (U3649_17380) - 4009872..4010519 (+) 648 WP_407352564.1 hypothetical protein -
  U3649_RS17485 (U3649_17385) - 4010599..4011888 (-) 1290 WP_407352565.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37776.22 Da        Isoelectric Point: 4.4149

>NTDB_id=916512 U3649_RS17470 WP_407352562.1 4005940..4006998(-) (pilM) [Luteimonas sp. R10]
MGLITKSQSPLVGVDISSTAVKLLQLSRSGERYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMSRSGSKAKHAAAA
VAGSAVITKVIPMPADLDEEEMESAVELEAVNYIPYPIEEVNLDFEVLGPMPGNTEMAQVLLAASRSENVEMRASALELG
GLSARIMDVEAFAIENAYALLAGTLNTPHDGIVALVDVGATMTTLNILRNGRSIYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPDSYEIEVLEPFKEALVQQISRLLQFFYAGSEFNRVDQIVLAGGCASIPGVSEMVEEQLGVQTVVANPLA
QMTLGSRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=916512 U3649_RS17470 WP_407352562.1 4005940..4006998(-) (pilM) [Luteimonas sp. R10]
GTGGGGCTAATCACAAAAAGCCAGTCGCCGCTCGTAGGCGTCGACATCAGTTCGACAGCGGTCAAGCTTCTGCAGCTGTC
GCGCTCGGGCGAGCGCTACCGGGTCGAGCACTACGCCGTCGAGCCGCTGCCGCCCAACGCGGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCAGTCGGCGAGGCCATCCGCCGCGCGATGTCGCGCTCGGGCAGCAAGGCCAAGCATGCCGCCGCCGCG
GTCGCCGGTTCGGCGGTCATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGGAGGAGATGGAGTCCGCGGTCGA
GCTGGAGGCGGTGAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGACTTCGAGGTGCTCGGCCCGATGCCGGGCA
ACACCGAGATGGCACAGGTGCTGCTGGCCGCGTCGCGCTCGGAGAACGTGGAGATGCGGGCTTCCGCCCTGGAACTCGGC
GGCCTGTCCGCGCGGATCATGGACGTCGAGGCCTTCGCCATCGAGAACGCCTATGCGCTGCTGGCCGGCACGCTGAACAC
CCCGCACGACGGCATCGTCGCGCTGGTCGACGTCGGCGCCACCATGACCACCCTCAACATCCTGCGCAACGGCCGCAGCA
TCTACAGCCGCGAACAGGTCTTCGGCGGCAAGCAGCTGACCGACGAGGTCATGCGCCGCTACGGCCTCAGCTACGAGGAG
GCGGGCCTGGCCAAGCGCCAGGGGGGCCTGCCCGACAGCTACGAGATCGAGGTGCTCGAGCCCTTCAAGGAAGCCCTGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTCCTCGCCGGCG
GCTGCGCTTCGATCCCGGGCGTTTCCGAGATGGTGGAGGAGCAACTGGGCGTCCAGACCGTGGTCGCCAATCCGCTGGCG
CAGATGACCCTCGGTTCGCGGGTGCAGGCGCACGCGCTGGCGCAGGACGCGCCGGCCCTGATGATCGCCTGCGGGCTCGC
ACTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

48.596

100

0.491
  pilM Legionella pneumophila strain ERS1305867

44.759

100

0.449