Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U3649_RS16390 Genome accession   NZ_CP141262
Coordinates   3763664..3764149 (-) Length   161 a.a.
NCBI ID   WP_407352361.1    Uniprot ID   -
Organism   Luteimonas sp. R10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3758664..3769149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3649_RS16365 (U3649_16265) - 3759577..3760071 (-) 495 WP_407352356.1 DUF4019 domain-containing protein -
  U3649_RS16370 (U3649_16270) rfbD 3760189..3761106 (-) 918 WP_407352357.1 dTDP-4-dehydrorhamnose reductase -
  U3649_RS16375 (U3649_16275) rfbC 3761103..3761660 (-) 558 WP_407352358.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  U3649_RS16380 (U3649_16280) rfbA 3761657..3762544 (-) 888 WP_407352359.1 glucose-1-phosphate thymidylyltransferase RfbA -
  U3649_RS16385 (U3649_16285) rfbB 3762541..3763596 (-) 1056 WP_407352360.1 dTDP-glucose 4,6-dehydratase -
  U3649_RS16390 (U3649_16290) ssb 3763664..3764149 (-) 486 WP_407352361.1 single-stranded DNA-binding protein Machinery gene
  U3649_RS16395 (U3649_16295) - 3764322..3765317 (+) 996 WP_407352362.1 polyprenyl synthetase family protein -
  U3649_RS16400 (U3649_16300) - 3765508..3766323 (-) 816 WP_407352363.1 dienelactone hydrolase family protein -
  U3649_RS16405 (U3649_16305) murD 3766638..3768158 (-) 1521 WP_407352364.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17349.19 Da        Isoelectric Point: 5.3193

>NTDB_id=916509 U3649_RS16390 WP_407352361.1 3763664..3764149(-) (ssb) [Luteimonas sp. R10]
MARGINKAILVGNLGNDPETKYTQGGMAITKISLATTSVRKDRDGNMQENTQWHRVTFFGKLGEIAGEYLRKGSQVYVEG
EIRYDKYTGQDGVEKYFTEIVANEMQMLGGRGEGGGGGGGGGGGGGERPARPQRQESAAPRRQPSSQPAPMDDFSDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=916509 U3649_RS16390 WP_407352361.1 3763664..3764149(-) (ssb) [Luteimonas sp. R10]
ATGGCCCGTGGCATCAACAAGGCGATCCTGGTCGGCAATCTCGGCAACGACCCCGAAACCAAGTACACCCAGGGCGGCAT
GGCCATCACCAAGATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACATGCAGGAGAACACCCAGTGGC
ACCGGGTGACCTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGGTCGCAGGTCTACGTCGAGGGC
GAGATCCGCTACGACAAGTACACCGGCCAGGACGGGGTGGAGAAATACTTCACCGAGATCGTGGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAAGGTGGCGGCGGGGGCGGGGGCGGTGGCGGTGGTGGCGGCGAACGTCCGGCGCGCCCGCAGC
GGCAGGAGTCGGCGGCGCCGCGCAGGCAGCCGTCCTCGCAACCGGCGCCGATGGACGACTTCTCGGACGACGACATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.126

100

0.509
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.509
  ssb Vibrio cholerae strain A1552

45.763

100

0.503
  ssb Glaesserella parasuis strain SC1401

41.899

100

0.466