Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VKI21_RS06545 Genome accession   NZ_CP141255
Coordinates   1487843..1488202 (-) Length   119 a.a.
NCBI ID   WP_015220395.1    Uniprot ID   A0A844GR21
Organism   Cyanobacterium aponinum UTEX 3222     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482843..1493202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKI21_RS06525 (VKI21_06525) - 1482974..1483258 (+) 285 WP_015220399.1 hypothetical protein -
  VKI21_RS06530 (VKI21_06530) - 1483310..1484002 (+) 693 WP_015220398.1 ABC transporter ATP-binding protein -
  VKI21_RS06535 (VKI21_06535) pheT 1484130..1486568 (-) 2439 WP_342597651.1 phenylalanine--tRNA ligase subunit beta -
  VKI21_RS06540 (VKI21_06540) - 1486932..1487471 (-) 540 WP_099436720.1 chemotaxis protein CheW -
  VKI21_RS06545 (VKI21_06545) pilH 1487843..1488202 (-) 360 WP_015220395.1 response regulator Machinery gene
  VKI21_RS06550 (VKI21_06550) - 1488344..1489546 (-) 1203 WP_015220394.1 response regulator -
  VKI21_RS06555 (VKI21_06555) - 1489850..1491349 (-) 1500 WP_342597652.1 AAA family ATPase -
  VKI21_RS06560 (VKI21_06560) - 1491912..1492205 (-) 294 WP_342597653.1 four helix bundle protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12850.87 Da        Isoelectric Point: 4.7399

>NTDB_id=916427 VKI21_RS06545 WP_015220395.1 1487843..1488202(-) (pilH) [Cyanobacterium aponinum UTEX 3222]
MGNALIVDDSSTERKILTGYLQELGISVTTAESGEEALEKIKGNTPDLVVLDVVLPGKSGFEVCREIKSGTNTGKIPIIM
CSTKGSEMDKFWGMKQGADAYIPKPVDKEEFLSAVKKLI

Nucleotide


Download         Length: 360 bp        

>NTDB_id=916427 VKI21_RS06545 WP_015220395.1 1487843..1488202(-) (pilH) [Cyanobacterium aponinum UTEX 3222]
ATGGGAAACGCATTAATTGTTGACGATTCTTCCACTGAAAGAAAAATTTTAACAGGTTATTTACAAGAATTGGGTATTAG
TGTTACAACTGCCGAAAGTGGAGAAGAAGCCCTCGAAAAAATCAAAGGTAATACCCCAGACCTCGTCGTTTTAGATGTAG
TCTTGCCGGGGAAAAGTGGTTTTGAAGTATGTCGAGAAATAAAATCAGGTACAAACACGGGTAAAATACCAATCATTATG
TGTTCGACAAAAGGTAGTGAAATGGACAAATTTTGGGGAATGAAGCAAGGTGCAGATGCTTATATTCCTAAACCAGTGGA
TAAAGAAGAATTCCTCAGTGCTGTCAAAAAACTGATTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844GR21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

52.101

100

0.521
  vicR Streptococcus mutans UA159

41.379

97.479

0.403
  micA Streptococcus pneumoniae Cp1015

39.496

100

0.395
  pilG Acinetobacter baumannii strain A118

38.261

96.639

0.37