Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OCV30_RS09220 Genome accession   NZ_AP025460
Coordinates   2074548..2075129 (-) Length   193 a.a.
NCBI ID   WP_065680228.1    Uniprot ID   A0A1C3J2Z3
Organism   Vibrio atlanticus strain CECT 7223     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2069548..2080129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS09200 - 2069630..2070892 (-) 1263 WP_065680231.1 DUF945 family protein -
  OCV30_RS09205 - 2071076..2073019 (+) 1944 WP_065680230.1 ATP-binding protein -
  OCV30_RS09210 - 2073012..2073509 (+) 498 WP_065680229.1 response regulator -
  OCV30_RS09215 - 2073867..2074421 (+) 555 WP_009847060.1 hypothetical protein -
  OCV30_RS09220 tfoX 2074548..2075129 (-) 582 WP_065680228.1 TfoX/Sxy family DNA transformation protein Regulator
  OCV30_RS09225 - 2075484..2076404 (+) 921 WP_017096721.1 HDOD domain-containing protein -
  OCV30_RS09230 - 2076459..2077364 (+) 906 WP_065680227.1 lysine exporter LysO family protein -
  OCV30_RS09235 - 2077539..2078066 (+) 528 WP_009847065.1 hypothetical protein -
  OCV30_RS09240 panP 2078185..2079828 (+) 1644 WP_017101464.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22146.49 Da        Isoelectric Point: 8.6706

>NTDB_id=91642 OCV30_RS09220 WP_065680228.1 2074548..2075129(-) (tfoX) [Vibrio atlanticus strain CECT 7223]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEDCVFIRGGKLLDKKLTGLDCEKYRHVKKQTTATVNYYDITD
LFTSEHPELDSIIRTSIDNSIQQRSFKKSSASLRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGASEVFNKVREAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=91642 OCV30_RS09220 WP_065680228.1 2074548..2075129(-) (tfoX) [Vibrio atlanticus strain CECT 7223]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAACATCAAAAGCGCTCTATGTTTGGAGGTATTGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTGTTGAGTGAAGATTGTGTATTCATTCGAGGTGGGAAGTTATTAGATAAAAAGC
TGACGGGGCTTGATTGTGAAAAGTATCGTCACGTAAAAAAGCAGACGACAGCAACCGTGAATTACTACGACATCACGGAT
CTCTTTACGTCTGAGCATCCTGAATTGGATAGTATTATTCGTACTTCAATCGATAATTCAATTCAGCAGCGTAGCTTCAA
AAAATCATCTGCGAGCCTTAGATTAAGGGATTTGCCTAACATGCAACTGACGTTAGAACGCATGGTTAAAAAGGCTGGAG
TGGATGATGTTTCAATGTTTATGCAGTTGGGTGCATCTGAAGTGTTTAATAAGGTTCGCGAAGCGTACGGAAACGATGTT
GACCTAAAATTACTTTGGAAGTTTGCGGGTGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(114-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3J2Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.575

100

0.736
  tfoX Vibrio cholerae strain A1552

73.575

100

0.736
  tfoX Vibrio parahaemolyticus RIMD 2210633

71.503

100

0.715
  tfoX Vibrio campbellii strain DS40M4

70.984

100

0.71
  tfoX Aliivibrio fischeri ES114

56.316

98.446

0.554

Multiple sequence alignment