Detailed information NTG0916344

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: NLM83_RS17465
• Genome accession: NZ_CP141204
• Coordinates: 3555623..3556159 (+)
• Length: 178 a.a.
• NCBI ID: WP_000168305.1
• Uniprot ID: A0A9P2PPK2
• Organism: Escherichia coli strain WGS1363
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3548814..3569693	3555623..3556159	within	0

Gene organization within MGE regions

Location: 3548814..3569693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLM83_RS17440 (NLM83_17440)	-	3548814..3550634 (-)	1821	WP_000704416.1	ATP-binding protein	-
NLM83_RS17445 (NLM83_17445)	aphA	3550911..3551624 (+)	714	WP_001226933.1	acid phosphatase AphA	-
NLM83_RS17450 (NLM83_17450)	yjbQ	3551735..3552151 (+)	417	WP_000270369.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
NLM83_RS17455 (NLM83_17455)	yjbR	3552155..3552511 (+)	357	WP_000153726.1	MmcQ/YjbR family DNA-binding protein	-
NLM83_RS17460 (NLM83_17460)	uvrA	3552546..3555368 (-)	2823	WP_000357755.1	excinuclease ABC subunit UvrA	-
NLM83_RS17465 (NLM83_17465)	ssb	3555623..3556159 (+)	537	WP_000168305.1	single-stranded DNA-binding protein SSB1	Machinery gene
NLM83_RS17470 (NLM83_17470)	-	3556318..3557565 (+)	1248	WP_000414651.1	tyrosine-type recombinase/integrase	-
NLM83_RS17475 (NLM83_17475)	-	3557773..3558942 (-)	1170	Protein_3418	IS3-like element ISEc52 family transposase	-
NLM83_RS17480 (NLM83_17480)	-	3559048..3560343 (+)	1296	WP_231375054.1	site-specific integrase	-
NLM83_RS17485 (NLM83_17485)	-	3560360..3562393 (+)	2034	WP_000807722.1	hypothetical protein	-
NLM83_RS17490 (NLM83_17490)	-	3562386..3562805 (+)	420	WP_001062122.1	hypothetical protein	-
NLM83_RS17495 (NLM83_17495)	avs4	3562881..3567644 (+)	4764	WP_000240574.1	AVAST type 4 anti-phage nuclease Avs4	-
NLM83_RS17500 (NLM83_17500)	-	3568183..3569004 (-)	822	WP_001272932.1	abortive infection system antitoxin AbiGi family protein	-
NLM83_RS17505 (NLM83_17505)	yjcB	3569412..3569693 (-)	282	WP_001296643.1	YjcB family protein	-

Sequence

Protein

• Length: 178 a.a.
• Molecular weight: 18975.00 Da
• Isoelectric Point: 5.2358

>NTDB_id=916344 NLM83_RS17465 WP_000168305.1 3555623..3556159(+) (ssb) [Escherichia coli strain WGS1363]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide

• Length: 537 bp

>NTDB_id=916344 NLM83_RS17465 WP_000168305.1 3555623..3556159(+) (ssb) [Escherichia coli strain WGS1363]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	74.444	100	0.753
ssb	Glaesserella parasuis strain SC1401	57.923	100	0.596
ssb	Neisseria meningitidis MC58	48.066	100	0.489
ssb	Neisseria gonorrhoeae MS11	48.066	100	0.489