Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U3654_RS06690 Genome accession   NZ_CP141179
Coordinates   1379300..1379836 (-) Length   178 a.a.
NCBI ID   WP_324754564.1    Uniprot ID   -
Organism   Roseovarius sp. Pro17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1374300..1384836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3654_RS06665 - 1374721..1375008 (+) 288 WP_324754559.1 DUF1330 domain-containing protein -
  U3654_RS06670 - 1375395..1375664 (+) 270 WP_324754560.1 hypothetical protein -
  U3654_RS06675 - 1375827..1376105 (+) 279 WP_324754561.1 hypothetical protein -
  U3654_RS06680 typA 1376446..1378266 (-) 1821 WP_324754562.1 translational GTPase TypA -
  U3654_RS06685 - 1378374..1379252 (-) 879 WP_324754563.1 GNAT family N-acetyltransferase -
  U3654_RS06690 ssb 1379300..1379836 (-) 537 WP_324754564.1 single-stranded DNA-binding protein Machinery gene
  U3654_RS06695 - 1380029..1380613 (+) 585 WP_324754565.1 lytic transglycosylase domain-containing protein -
  U3654_RS06700 - 1380621..1381409 (-) 789 WP_324754566.1 AraC family transcriptional regulator -
  U3654_RS06705 miaA 1381503..1382378 (-) 876 WP_324754567.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  U3654_RS06710 pyrH 1382537..1383268 (+) 732 WP_324754568.1 UMP kinase -
  U3654_RS06715 frr 1383299..1383865 (+) 567 WP_324754569.1 ribosome recycling factor -
  U3654_RS06720 uppS 1383865..1384626 (+) 762 WP_416384565.1 polyprenyl diphosphate synthase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18157.64 Da        Isoelectric Point: 5.0099

>NTDB_id=916209 U3654_RS06690 WP_324754564.1 1379300..1379836(-) (ssb) [Roseovarius sp. Pro17]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSENWKDKSTGERREKTEWHSVAIFNEGLVRIAEQYLRKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFNGTLTMLDGRSEGGGGGGGGGGDYSGGDSGGGYGGPSDGGGSSGGSGGGGGGG
GGGGGSAPSRDFDDEIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=916209 U3654_RS06690 WP_324754564.1 1379300..1379836(-) (ssb) [Roseovarius sp. Pro17]
ATGGCCGGGTCGGTTAACAAAGTTATTCTCATCGGCAATCTGGGACGTGATCCCGAGGTCCGCACGTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACCTCAGAAAACTGGAAGGACAAAAGCACTGGCGAGCGTCGTGAAAAGACCGAAT
GGCATTCGGTCGCAATCTTCAACGAAGGTCTGGTACGCATCGCCGAGCAATATCTGCGCAAGGGCTCCAAGGTCTATATC
GAGGGCCAGCTTCAAACCCGAAAATGGCAGGACCAGTCCGGGGCGGACCGCTATTCGACCGAAGTGGTGCTTCAGGGGTT
TAACGGCACGCTGACCATGCTCGACGGGCGTAGCGAAGGTGGCGGCGGAGGTGGCGGTGGCGGCGGTGACTACTCCGGCG
GCGATAGCGGCGGTGGCTATGGCGGGCCGTCCGATGGCGGCGGGTCCAGTGGCGGGTCCGGCGGCGGTGGCGGTGGCGGT
GGCGGTGGCGGCGGCAGCGCCCCATCACGCGACTTCGACGATGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.714

98.315

0.528
  ssb Glaesserella parasuis strain SC1401

49.462

100

0.517
  ssb Neisseria meningitidis MC58

40.11

100

0.41
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.404