Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABWQ10_RS12225 Genome accession   NZ_CP159917
Coordinates   2256568..2257104 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain EC554     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2251568..2262104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWQ10_RS12205 (ABWQ10_12205) aphA 2251857..2252570 (+) 714 WP_001307512.1 acid phosphatase AphA -
  ABWQ10_RS12210 (ABWQ10_12210) yjbQ 2252681..2253097 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABWQ10_RS12215 (ABWQ10_12215) yjbR 2253101..2253457 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABWQ10_RS12220 (ABWQ10_12220) uvrA 2253492..2256314 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABWQ10_RS12225 (ABWQ10_12225) ssb 2256568..2257104 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABWQ10_RS12230 (ABWQ10_12230) yjcB 2257203..2257484 (-) 282 WP_001341690.1 YjcB family protein -
  ABWQ10_RS12235 (ABWQ10_12235) pdeC 2257914..2259500 (+) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  ABWQ10_RS12240 (ABWQ10_12240) soxS 2259503..2259826 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABWQ10_RS12245 (ABWQ10_12245) soxR 2259912..2260376 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=916112 ABWQ10_RS12225 WP_000168305.1 2256568..2257104(+) (ssb) [Escherichia coli strain EC554]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=916112 ABWQ10_RS12225 WP_000168305.1 2256568..2257104(+) (ssb) [Escherichia coli strain EC554]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489