Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPJ73_RS06315 Genome accession   NZ_CP140795
Coordinates   1376635..1377135 (+) Length   166 a.a.
NCBI ID   WP_083004547.1    Uniprot ID   -
Organism   Pasteurella multocida strain PMLO     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1371635..1382135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ73_RS06300 (SPJ73_06290) rlmB 1372178..1372915 (+) 738 WP_083004553.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SPJ73_RS06305 (SPJ73_06295) sodC 1373001..1373561 (-) 561 WP_064964961.1 superoxide dismutase family protein -
  SPJ73_RS06310 (SPJ73_06300) uvrA 1373632..1376463 (-) 2832 WP_083004550.1 excinuclease ABC subunit UvrA -
  SPJ73_RS06315 (SPJ73_06305) ssb 1376635..1377135 (+) 501 WP_083004547.1 single-stranded DNA-binding protein Machinery gene
  SPJ73_RS06320 - 1377932..1378360 (+) 429 WP_379056053.1 hypothetical protein -
  SPJ73_RS06325 (SPJ73_06320) - 1378707..1379429 (+) 723 WP_242680822.1 hypothetical protein -
  SPJ73_RS06330 (SPJ73_06325) - 1380163..1380315 (+) 153 WP_242680823.1 hypothetical protein -
  SPJ73_RS06335 (SPJ73_06330) arsB 1380607..1381395 (+) 789 Protein_1213 ACR3 family arsenite efflux transporter -
  SPJ73_RS06340 (SPJ73_06335) - 1381479..1382093 (-) 615 WP_010907412.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18685.73 Da        Isoelectric Point: 5.3353

>NTDB_id=915630 SPJ73_RS06315 WP_083004547.1 1376635..1377135(+) (ssb) [Pasteurella multocida strain PMLO]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=915630 SPJ73_RS06315 WP_083004547.1 1376635..1377135(+) (ssb) [Pasteurella multocida strain PMLO]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCCCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.568

100

0.753
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

43.503

100

0.464
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.464