Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SPJ73_RS05585 Genome accession   NZ_CP140795
Coordinates   1206579..1207790 (-) Length   403 a.a.
NCBI ID   WP_115299816.1    Uniprot ID   -
Organism   Pasteurella multocida strain PMLO     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201579..1212790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ73_RS05555 (SPJ73_05545) raiA 1202355..1202672 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  SPJ73_RS05560 (SPJ73_05550) - 1202917..1204290 (-) 1374 WP_096743226.1 sodium:alanine symporter family protein -
  SPJ73_RS05565 (SPJ73_05555) - 1204760..1205008 (-) 249 WP_115299813.1 GNAT family N-acetyltransferase -
  SPJ73_RS05570 (SPJ73_05560) yacG 1205008..1205211 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  SPJ73_RS05575 (SPJ73_05565) coaE 1205222..1205842 (-) 621 WP_115299814.1 dephospho-CoA kinase -
  SPJ73_RS05580 (SPJ73_05570) - 1205854..1206579 (-) 726 WP_115299815.1 A24 family peptidase -
  SPJ73_RS05585 (SPJ73_05575) pilC 1206579..1207790 (-) 1212 WP_115299816.1 type II secretion system F family protein Machinery gene
  SPJ73_RS05590 (SPJ73_05580) pilB 1207790..1209178 (-) 1389 WP_150332209.1 GspE/PulE family protein Machinery gene
  SPJ73_RS05595 (SPJ73_05585) pilA 1209178..1209612 (-) 435 WP_150332210.1 prepilin peptidase-dependent pilin Machinery gene
  SPJ73_RS05600 (SPJ73_05590) ampD 1209772..1210338 (+) 567 WP_203331640.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  SPJ73_RS05605 (SPJ73_05595) rppH 1210924..1211520 (+) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  SPJ73_RS05610 (SPJ73_05600) - 1211523..1212317 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46069.05 Da        Isoelectric Point: 9.7864

>NTDB_id=915623 SPJ73_RS05585 WP_115299816.1 1206579..1207790(-) (pilC) [Pasteurella multocida strain PMLO]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=915623 SPJ73_RS05585 WP_115299816.1 1206579..1207790(-) (pilC) [Pasteurella multocida strain PMLO]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAGCAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTACATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCATCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTTGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATATCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTGTTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAACATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTGCAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATCGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.395

100

0.486
  pilC Haemophilus influenzae 86-028NP

48.148

100

0.484
  pilC Glaesserella parasuis strain SC1401

39.259

100

0.395