Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABYA78_RS03620 Genome accession   NZ_CP159883
Coordinates   752687..753184 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 100690     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 747687..758184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABYA78_RS03605 (ABYA78_03605) bfr 747695..748159 (+) 465 WP_003093668.1 bacterioferritin -
  ABYA78_RS03610 (ABYA78_03610) uvrA 748231..751068 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  ABYA78_RS03615 (ABYA78_03615) - 751282..752670 (+) 1389 WP_009316331.1 MFS transporter -
  ABYA78_RS03620 (ABYA78_03620) ssb 752687..753184 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  ABYA78_RS03625 (ABYA78_03625) pchA 753273..754703 (-) 1431 WP_043543068.1 isochorismate synthase PchA -
  ABYA78_RS03630 (ABYA78_03630) pchB 754700..755005 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  ABYA78_RS03635 (ABYA78_03635) pchC 755005..755760 (-) 756 WP_015502297.1 pyochelin biosynthesis editing thioesterase PchC -
  ABYA78_RS03640 (ABYA78_03640) pchD 755757..757400 (-) 1644 WP_043543070.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=915522 ABYA78_RS03620 WP_003114685.1 752687..753184(+) (ssb) [Pseudomonas aeruginosa strain 100690]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=915522 ABYA78_RS03620 WP_003114685.1 752687..753184(+) (ssb) [Pseudomonas aeruginosa strain 100690]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515