Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U6038_RS15260 Genome accession   NZ_CP140715
Coordinates   3148774..3149358 (-) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3143774..3154358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS15245 (U6038_15245) - 3144691..3145989 (+) 1299 WP_333654175.1 dicarboxylate/amino acid:cation symporter -
  U6038_RS15250 (U6038_15250) - 3146125..3147015 (-) 891 WP_286405272.1 LysR substrate-binding domain-containing protein -
  U6038_RS15255 (U6038_15255) - 3147150..3148568 (+) 1419 WP_333654180.1 aspartate ammonia-lyase -
  U6038_RS15260 (U6038_15260) ssb 3148774..3149358 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  U6038_RS15265 (U6038_15265) - 3149410..3150774 (-) 1365 WP_004978200.1 MFS transporter -
  U6038_RS15270 (U6038_15270) - 3150934..3152013 (-) 1080 WP_058870674.1 DUF475 domain-containing protein -
  U6038_RS15275 (U6038_15275) tenA 3152225..3152899 (+) 675 WP_201701835.1 thiaminase II -
  U6038_RS15280 (U6038_15280) - 3153061..3153435 (+) 375 WP_062032036.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=915139 U6038_RS15260 WP_004691666.1 3148774..3149358(-) (ssb) [Acinetobacter johnsonii strain FAHZZU3110hy]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=915139 U6038_RS15260 WP_004691666.1 3148774..3149358(-) (ssb) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCCACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACTACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGCGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGTAATCCAGCAGCGGGTAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCACCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423