Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   U6038_RS00910 Genome accession   NZ_CP140715
Coordinates   181606..182739 (-) Length   377 a.a.
NCBI ID   WP_333654724.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 176606..187739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS00880 (U6038_00880) - 176814..177404 (-) 591 WP_333654715.1 hypothetical protein -
  U6038_RS00885 (U6038_00885) - 177537..177911 (-) 375 WP_333654717.1 RcnB family protein -
  U6038_RS00890 (U6038_00890) - 178111..178656 (-) 546 WP_004984048.1 glutathione peroxidase -
  U6038_RS00895 (U6038_00895) - 178781..179335 (-) 555 WP_148826929.1 hypothetical protein -
  U6038_RS00900 (U6038_00900) - 179671..180591 (+) 921 WP_087013942.1 DMT family transporter -
  U6038_RS00905 (U6038_00905) - 180991..181560 (-) 570 WP_333654720.1 L-threonylcarbamoyladenylate synthase -
  U6038_RS00910 (U6038_00910) dprA 181606..182739 (-) 1134 WP_333654724.1 DNA-processing protein DprA Machinery gene
  U6038_RS00915 (U6038_00915) tsaP 182762..183916 (-) 1155 WP_234304202.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  U6038_RS00920 (U6038_00920) def 184037..184570 (+) 534 WP_004684452.1 peptide deformylase -
  U6038_RS00925 (U6038_00925) - 184661..185098 (+) 438 WP_078389804.1 DUF2946 family protein -
  U6038_RS00930 (U6038_00930) - 185171..187237 (+) 2067 WP_333654729.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41792.40 Da        Isoelectric Point: 6.7178

>NTDB_id=915101 U6038_RS00910 WP_333654724.1 181606..182739(-) (dprA) [Acinetobacter johnsonii strain FAHZZU3110hy]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQHHFGTSAKAVAASNLQIWPNLGLHKSHLQRVVEIQTPAGQTKLQTLLHNV
QANCDFILLDTESHYPSQLLPYADRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLDLTYPSQHQTLRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAQRAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQENTPSMSIEIPS
DLLELYNQLDWVGQNMDQLNFKLNTDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=915101 U6038_RS00910 WP_333654724.1 181606..182739(-) (dprA) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCGAGCTTTCA
AAAACTACAGCACCATTTTGGTACAAGCGCAAAGGCTGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGCCATCTACAACGTGTCGTAGAAATCCAGACACCTGCTGGCCAAACCAAATTACAAACTTTACTGCATAACGTC
CAAGCCAATTGTGATTTTATTTTGCTTGATACTGAAAGTCATTATCCCTCGCAACTGCTGCCCTATGCTGACCGGCCACC
GATTTTATTTGGTCAAGGTAATCCACAAAGTTTACTCCAACCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCGC
ACGGCAAACAAGTGGCTTATGACTTTGCTTATTACCTCGCCGAAAAAGGCTTTTATATTTGCAGTGGTTTGGCTGAAGGC
ATTGATGCAGCGGCACATCAGGGCGGCTTAAAATATCAACGTACCATTGCAGTGATGGGCACGGGCTTAGATCTCACCTA
CCCCTCCCAACATCAAACACTGCGTACGCAAATATTAGAAAATAATGGCTGTATTATTACTGAATTTTTACCGCATACAC
CGCCTTTACAGCACAATTTTCCACGGCGCAACCGCATCGTCAGTGCATTAAGTTTAGGGGTTGTGGTTGCAGAGGCCGCA
CTCAAAAGTGGCTCTCTAGGAACCGCCCAAAGAGCCGCAGAGCAAGGGAAAACCATTTTTGCGATCCCTGGTCATATTTA
CAGTGAACACCATCAAGGCTGTCATCAACTGATCAGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTTCCCACTCAATGGCATAGCCAATCCCAGTCGCAAGAAAACACACCAAGCATGAGTATTGAAATCCCATCT
GATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACACCGATAT
TGCCACACTCACTAGCCAATTAATGGAACTGGAGATTTTAGGACTCGCACAACAACAGGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

64.737

100

0.653

  dprA Acinetobacter baylyi ADP1

61.155

100

0.618