Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   U6038_RS00915 Genome accession   NZ_CP140715
Coordinates   182762..183916 (-) Length   384 a.a.
NCBI ID   WP_234304202.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177762..188916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS00890 (U6038_00890) - 178111..178656 (-) 546 WP_004984048.1 glutathione peroxidase -
  U6038_RS00895 (U6038_00895) - 178781..179335 (-) 555 WP_148826929.1 hypothetical protein -
  U6038_RS00900 (U6038_00900) - 179671..180591 (+) 921 WP_087013942.1 DMT family transporter -
  U6038_RS00905 (U6038_00905) - 180991..181560 (-) 570 WP_333654720.1 L-threonylcarbamoyladenylate synthase -
  U6038_RS00910 (U6038_00910) dprA 181606..182739 (-) 1134 WP_333654724.1 DNA-processing protein DprA Machinery gene
  U6038_RS00915 (U6038_00915) tsaP 182762..183916 (-) 1155 WP_234304202.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  U6038_RS00920 (U6038_00920) def 184037..184570 (+) 534 WP_004684452.1 peptide deformylase -
  U6038_RS00925 (U6038_00925) - 184661..185098 (+) 438 WP_078389804.1 DUF2946 family protein -
  U6038_RS00930 (U6038_00930) - 185171..187237 (+) 2067 WP_333654729.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42242.15 Da        Isoelectric Point: 7.8309

>NTDB_id=915102 U6038_RS00915 WP_234304202.1 182762..183916(-) (tsaP) [Acinetobacter johnsonii strain FAHZZU3110hy]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVTSTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=915102 U6038_RS00915 WP_234304202.1 182762..183916(-) (tsaP) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCTGGCGTCACTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCTCCTGCTTTAAAAGCCAATG
CACCAAATGTTTACGTGGTGAAAAAAGGCGATACCCTTTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGTTTATTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGCGCTGCCGATCAGCGTGTCATTGCAGG
TAAAGGGCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGATGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCAAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGTAATATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTCGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.661