Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   S0I03_RS19910 Genome accession   NZ_CP140613
Coordinates   4026247..4026765 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain WN-I     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4021247..4031765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S0I03_RS19865 - 4021272..4022603 (+) 1332 WP_014419380.1 MFS transporter -
  S0I03_RS19870 - 4022635..4023015 (-) 381 WP_014419381.1 VOC family protein -
  S0I03_RS19875 - 4023072..4024010 (-) 939 WP_014419382.1 LacI family DNA-binding transcriptional regulator -
  S0I03_RS20095 - 4024073..4024639 (-) 567 Protein_3860 endonuclease/exonuclease/phosphatase family protein -
  S0I03_RS19895 - 4024636..4025193 (-) 558 WP_014419383.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  S0I03_RS19900 - 4025190..4025771 (-) 582 WP_014419384.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  S0I03_RS19905 rpsR 4025964..4026203 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  S0I03_RS19910 ssbA 4026247..4026765 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  S0I03_RS19915 rpsF 4026805..4027092 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  S0I03_RS19920 ychF 4027204..4028304 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  S0I03_RS19925 - 4028431..4030434 (-) 2004 WP_014419385.1 molybdopterin-dependent oxidoreductase -
  S0I03_RS19930 - 4030481..4030687 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=914874 S0I03_RS19910 WP_004392979.1 4026247..4026765(-) (ssbA) [Bacillus velezensis strain WN-I]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=914874 S0I03_RS19910 WP_004392979.1 4026247..4026765(-) (ssbA) [Bacillus velezensis strain WN-I]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378