Detailed information NTG0914467

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: SPH25_RS06390
• Genome accession: NZ_CP140484
• Coordinates: 1332852..1333988 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045779.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 52N
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1327852..1338988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPH25_RS06370	-	1328744..1329037 (+)	294	WP_042350090.1	hypothetical protein	-
SPH25_RS06375	-	1329286..1330218 (-)	933	WP_001002433.1	GDP-L-fucose synthase	-
SPH25_RS06380	gmd	1330211..1331356 (-)	1146	WP_014533533.1	GDP-mannose 4,6-dehydratase	-
SPH25_RS06385	-	1331370..1332782 (-)	1413	WP_000694850.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
SPH25_RS06390	comB10	1332852..1333988 (-)	1137	WP_001045779.1	DNA type IV secretion system protein ComB10	Machinery gene
SPH25_RS06395	comB9	1333981..1334943 (-)	963	WP_014533534.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
SPH25_RS06400	comB8	1334943..1335680 (-)	738	WP_000660526.1	virB8 family protein	Machinery gene
SPH25_RS06405	comB7	1335677..1335802 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
SPH25_RS06410	comB6	1335818..1336873 (-)	1056	WP_000786672.1	P-type conjugative transfer protein TrbL	Machinery gene
SPH25_RS06415	-	1336881..1337876 (-)	996	WP_000468447.1	PDZ domain-containing protein	-
SPH25_RS06420	-	1337876..1338169 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
SPH25_RS06425	panD	1338180..1338530 (-)	351	WP_000142205.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42159.80 Da
• Isoelectric Point: 9.8942

>NTDB_id=914467 SPH25_RS06390 WP_001045779.1 1332852..1333988(-) (comB10) [Helicobacter pylori strain 52N]
MNKWIKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=914467 SPH25_RS06390 WP_001045779.1 1332852..1333988(-) (comB10) [Helicobacter pylori strain 52N]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACCCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTTCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.296	100	0.963