Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   SPH25_RS06400 Genome accession   NZ_CP140484
Coordinates   1334943..1335680 (-) Length   245 a.a.
NCBI ID   WP_000660526.1    Uniprot ID   -
Organism   Helicobacter pylori strain 52N     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1329943..1340680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH25_RS06380 gmd 1330211..1331356 (-) 1146 WP_014533533.1 GDP-mannose 4,6-dehydratase -
  SPH25_RS06385 - 1331370..1332782 (-) 1413 WP_000694850.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  SPH25_RS06390 comB10 1332852..1333988 (-) 1137 WP_001045779.1 DNA type IV secretion system protein ComB10 Machinery gene
  SPH25_RS06395 comB9 1333981..1334943 (-) 963 WP_014533534.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  SPH25_RS06400 comB8 1334943..1335680 (-) 738 WP_000660526.1 virB8 family protein Machinery gene
  SPH25_RS06405 comB7 1335677..1335802 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  SPH25_RS06410 comB6 1335818..1336873 (-) 1056 WP_000786672.1 P-type conjugative transfer protein TrbL Machinery gene
  SPH25_RS06415 - 1336881..1337876 (-) 996 WP_000468447.1 PDZ domain-containing protein -
  SPH25_RS06420 - 1337876..1338169 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  SPH25_RS06425 panD 1338180..1338530 (-) 351 WP_000142205.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28544.77 Da        Isoelectric Point: 8.9546

>NTDB_id=914469 SPH25_RS06400 WP_000660526.1 1334943..1335680(-) (comB8) [Helicobacter pylori strain 52N]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIVAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=914469 SPH25_RS06400 WP_000660526.1 1334943..1335680(-) (comB8) [Helicobacter pylori strain 52N]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAATCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTGTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAATCCCATTGCGAGCGT
TTCTATTGTGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.951

100

0.967