Detailed information NTG0914471

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: SPH25_RS06410
• Genome accession: NZ_CP140484
• Coordinates: 1335818..1336873 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786672.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 52N
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1330818..1341873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPH25_RS06385	-	1331370..1332782 (-)	1413	WP_000694850.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
SPH25_RS06390	comB10	1332852..1333988 (-)	1137	WP_001045779.1	DNA type IV secretion system protein ComB10	Machinery gene
SPH25_RS06395	comB9	1333981..1334943 (-)	963	WP_014533534.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
SPH25_RS06400	comB8	1334943..1335680 (-)	738	WP_000660526.1	virB8 family protein	Machinery gene
SPH25_RS06405	comB7	1335677..1335802 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
SPH25_RS06410	comB6	1335818..1336873 (-)	1056	WP_000786672.1	P-type conjugative transfer protein TrbL	Machinery gene
SPH25_RS06415	-	1336881..1337876 (-)	996	WP_000468447.1	PDZ domain-containing protein	-
SPH25_RS06420	-	1337876..1338169 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
SPH25_RS06425	panD	1338180..1338530 (-)	351	WP_000142205.1	aspartate 1-decarboxylase	-
SPH25_RS06430	-	1338520..1340745 (-)	2226	WP_001051539.1	ATP-dependent Clp protease ATP-binding subunit	-
SPH25_RS06435	-	1340745..1341020 (-)	276	WP_000784918.1	ATP-dependent Clp protease adaptor ClpS	-
SPH25_RS06440	-	1341043..1341455 (-)	413	Protein_1253	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39868.85 Da
• Isoelectric Point: 9.0412

>NTDB_id=914471 SPH25_RS06410 WP_000786672.1 1335818..1336873(-) (comB6) [Helicobacter pylori strain 52N]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=914471 SPH25_RS06410 WP_000786672.1 1335818..1336873(-) (comB6) [Helicobacter pylori strain 52N]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTGGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterProScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966