Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   SPG78_RS06555 Genome accession   NZ_CP140483
Coordinates   1351624..1352589 (-) Length   321 a.a.
NCBI ID   WP_014537399.1    Uniprot ID   A0AAI7ZX09
Organism   Helicobacter pylori strain 51N     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346624..1357589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG78_RS06535 - 1346929..1347861 (-) 933 WP_001002429.1 GDP-L-fucose synthase -
  SPG78_RS06540 gmd 1347854..1348999 (-) 1146 WP_014537398.1 GDP-mannose 4,6-dehydratase -
  SPG78_RS06545 - 1349013..1350425 (-) 1413 WP_000694858.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  SPG78_RS06550 comB10 1350495..1351631 (-) 1137 WP_001045729.1 DNA type IV secretion system protein ComB10 Machinery gene
  SPG78_RS06555 comB9 1351624..1352589 (-) 966 WP_014537399.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  SPG78_RS06560 comB8 1352589..1353332 (-) 744 WP_000660524.1 virB8 family protein Machinery gene
  SPG78_RS06565 comB7 1353329..1353454 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  SPG78_RS06570 comB6 1353470..1354525 (-) 1056 WP_000786701.1 P-type conjugative transfer protein TrbL Machinery gene
  SPG78_RS06575 - 1354533..1355528 (-) 996 WP_000468804.1 PDZ domain-containing protein -
  SPG78_RS06580 - 1355528..1355821 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  SPG78_RS06585 panD 1355832..1356182 (-) 351 WP_000142208.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 36847.45 Da        Isoelectric Point: 9.5634

>NTDB_id=914448 SPG78_RS06555 WP_014537399.1 1351624..1352589(-) (comB9) [Helicobacter pylori strain 51N]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLLFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMRIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPKEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide


Download         Length: 966 bp        

>NTDB_id=914448 SPG78_RS06555 WP_014537399.1 1351624..1352589(-) (comB9) [Helicobacter pylori strain 51N]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTACTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAGAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTAAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATTCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

91.104

100

0.925