Detailed information NTG0914451

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: SPG78_RS06570
• Genome accession: NZ_CP140483
• Coordinates: 1353470..1354525 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786701.1
• Uniprot ID: A0AAI7ZX07
• Organism: Helicobacter pylori strain 51N
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1348470..1359525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPG78_RS06545	-	1349013..1350425 (-)	1413	WP_000694858.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
SPG78_RS06550	comB10	1350495..1351631 (-)	1137	WP_001045729.1	DNA type IV secretion system protein ComB10	Machinery gene
SPG78_RS06555	comB9	1351624..1352589 (-)	966	WP_014537399.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
SPG78_RS06560	comB8	1352589..1353332 (-)	744	WP_000660524.1	virB8 family protein	Machinery gene
SPG78_RS06565	comB7	1353329..1353454 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
SPG78_RS06570	comB6	1353470..1354525 (-)	1056	WP_000786701.1	P-type conjugative transfer protein TrbL	Machinery gene
SPG78_RS06575	-	1354533..1355528 (-)	996	WP_000468804.1	PDZ domain-containing protein	-
SPG78_RS06580	-	1355528..1355821 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
SPG78_RS06585	panD	1355832..1356182 (-)	351	WP_000142208.1	aspartate 1-decarboxylase	-
SPG78_RS06590	-	1356172..1358394 (-)	2223	WP_001051520.1	ATP-dependent Clp protease ATP-binding subunit	-
SPG78_RS06595	-	1358394..1358669 (-)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
SPG78_RS06600	-	1358689..1359102 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39907.88 Da
• Isoelectric Point: 8.8165

>NTDB_id=914451 SPG78_RS06570 WP_000786701.1 1353470..1354525(-) (comB6) [Helicobacter pylori strain 51N]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=914451 SPG78_RS06570 WP_000786701.1 1353470..1354525(-) (comB6) [Helicobacter pylori strain 51N]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCATTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963