Detailed information NTG0914447

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: SPG78_RS06550
• Genome accession: NZ_CP140483
• Coordinates: 1350495..1351631 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045729.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 51N
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1345495..1356631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPG78_RS06530	hypE	1345680..1346678 (+)	999	WP_000378804.1	hydrogenase expression/formation protein HypE	-
SPG78_RS06535	-	1346929..1347861 (-)	933	WP_001002429.1	GDP-L-fucose synthase	-
SPG78_RS06540	gmd	1347854..1348999 (-)	1146	WP_014537398.1	GDP-mannose 4,6-dehydratase	-
SPG78_RS06545	-	1349013..1350425 (-)	1413	WP_000694858.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
SPG78_RS06550	comB10	1350495..1351631 (-)	1137	WP_001045729.1	DNA type IV secretion system protein ComB10	Machinery gene
SPG78_RS06555	comB9	1351624..1352589 (-)	966	WP_014537399.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
SPG78_RS06560	comB8	1352589..1353332 (-)	744	WP_000660524.1	virB8 family protein	Machinery gene
SPG78_RS06565	comB7	1353329..1353454 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
SPG78_RS06570	comB6	1353470..1354525 (-)	1056	WP_000786701.1	P-type conjugative transfer protein TrbL	Machinery gene
SPG78_RS06575	-	1354533..1355528 (-)	996	WP_000468804.1	PDZ domain-containing protein	-
SPG78_RS06580	-	1355528..1355821 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
SPG78_RS06585	panD	1355832..1356182 (-)	351	WP_000142208.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42180.82 Da
• Isoelectric Point: 9.9312

>NTDB_id=914447 SPG78_RS06550 WP_001045729.1 1350495..1351631(-) (comB10) [Helicobacter pylori strain 51N]
MNKWIKGALVFIGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNIESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQNPKNYEENLIFPTDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEIIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=914447 SPG78_RS06550 WP_001045729.1 1350495..1351631(-) (comB10) [Helicobacter pylori strain 51N]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTATAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAATATAGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAGATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
ACCCTAAAAATTACGAAGAAAACCTGATTTTCCCCACGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTTACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAATCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955