Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | U2S90_RS16790 | Genome accession | NZ_CP140441 |
| Coordinates | 3551585..3552109 (+) | Length | 174 a.a. |
| NCBI ID | WP_004249162.1 | Uniprot ID | A0A1Z1SRL1 |
| Organism | Proteus mirabilis strain 2023CK-01118 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3500554..3553781 | 3551585..3552109 | within | 0 |
Gene organization within MGE regions
Location: 3500554..3553781
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U2S90_RS16530 (U2S90_16520) | - | 3500554..3502200 (-) | 1647 | WP_196549807.1 | hypothetical protein | - |
| U2S90_RS16535 (U2S90_16525) | - | 3502187..3502747 (-) | 561 | WP_036908741.1 | hypothetical protein | - |
| U2S90_RS16540 (U2S90_16530) | - | 3502758..3503480 (-) | 723 | WP_213556050.1 | hypothetical protein | - |
| U2S90_RS16545 (U2S90_16535) | - | 3503502..3505487 (-) | 1986 | WP_213556052.1 | phage tail protein | - |
| U2S90_RS16550 (U2S90_16540) | - | 3505491..3506048 (-) | 558 | WP_049212312.1 | phage tail protein | - |
| U2S90_RS16555 (U2S90_16545) | - | 3506041..3507225 (-) | 1185 | WP_213556053.1 | baseplate J/gp47 family protein | - |
| U2S90_RS16560 (U2S90_16550) | - | 3507215..3507550 (-) | 336 | WP_049219617.1 | DUF2590 family protein | - |
| U2S90_RS16565 (U2S90_16555) | - | 3507561..3510077 (-) | 2517 | WP_141060551.1 | phage tail tape measure protein | - |
| U2S90_RS16570 | - | 3510077..3510220 (-) | 144 | WP_165544879.1 | DUF6890 family protein | - |
| U2S90_RS16575 (U2S90_16560) | - | 3510265..3510534 (-) | 270 | WP_049220759.1 | putative phage tail assembly chaperone | - |
| U2S90_RS16580 (U2S90_16570) | - | 3510643..3511017 (-) | 375 | WP_212637496.1 | hypothetical protein | - |
| U2S90_RS16585 (U2S90_16575) | - | 3511014..3511439 (-) | 426 | WP_071233399.1 | structural protein | - |
| U2S90_RS16590 (U2S90_16580) | - | 3511436..3511729 (-) | 294 | WP_036907276.1 | phage holin family protein | - |
| U2S90_RS16595 (U2S90_16585) | - | 3511744..3512196 (-) | 453 | WP_036907273.1 | DUF2597 family protein | - |
| U2S90_RS16600 (U2S90_16590) | - | 3512196..3513314 (-) | 1119 | WP_213556055.1 | DUF2586 domain-containing protein | - |
| U2S90_RS16605 (U2S90_16595) | - | 3513329..3514027 (-) | 699 | WP_135023809.1 | hypothetical protein | - |
| U2S90_RS16610 (U2S90_16600) | - | 3514024..3514512 (-) | 489 | WP_151252990.1 | phage tail protein | - |
| U2S90_RS16615 (U2S90_16605) | - | 3514509..3514961 (-) | 453 | WP_036907264.1 | head completion/stabilization protein | - |
| U2S90_RS16620 (U2S90_16610) | gpM | 3515296..3516000 (-) | 705 | WP_049212293.1 | phage terminase small subunit | - |
| U2S90_RS16625 (U2S90_16615) | - | 3516006..3517037 (-) | 1032 | WP_036907256.1 | phage major capsid protein, P2 family | - |
| U2S90_RS16630 (U2S90_16620) | - | 3517048..3517884 (-) | 837 | WP_212637495.1 | GPO family capsid scaffolding protein | - |
| U2S90_RS16635 (U2S90_16625) | - | 3518046..3519833 (+) | 1788 | WP_036907251.1 | terminase large subunit domain-containing protein | - |
| U2S90_RS16640 (U2S90_16630) | - | 3519833..3520867 (+) | 1035 | WP_174815125.1 | phage portal protein | - |
| U2S90_RS16645 (U2S90_16635) | - | 3520864..3521172 (+) | 309 | WP_036907246.1 | ogr/Delta-like zinc finger family protein | - |
| U2S90_RS16650 (U2S90_16640) | - | 3521174..3521356 (-) | 183 | WP_151252989.1 | hypothetical protein | - |
| U2S90_RS16655 (U2S90_16645) | - | 3521675..3523867 (-) | 2193 | WP_213556059.1 | replication endonuclease | - |
| U2S90_RS16660 (U2S90_16650) | - | 3523869..3524120 (-) | 252 | WP_036907235.1 | DUF2732 family protein | - |
| U2S90_RS16665 (U2S90_16655) | - | 3524197..3524544 (-) | 348 | WP_049219058.1 | DUF5347 domain-containing protein | - |
| U2S90_RS16670 (U2S90_16660) | - | 3524556..3524888 (-) | 333 | WP_152118365.1 | hypothetical protein | - |
| U2S90_RS16675 (U2S90_16665) | - | 3525048..3525557 (-) | 510 | WP_196557380.1 | phage regulatory CII family protein | - |
| U2S90_RS16680 (U2S90_16670) | - | 3525587..3525811 (-) | 225 | WP_036907225.1 | AlpA family transcriptional regulator | - |
| U2S90_RS16685 (U2S90_16675) | - | 3525961..3526551 (+) | 591 | WP_052124619.1 | phage repressor protein CI | - |
| U2S90_RS16690 (U2S90_16680) | - | 3526566..3526988 (+) | 423 | WP_036907222.1 | hypothetical protein | - |
| U2S90_RS16695 (U2S90_16685) | - | 3526993..3528024 (+) | 1032 | WP_088206997.1 | tyrosine-type recombinase/integrase | - |
| U2S90_RS16700 (U2S90_16690) | - | 3528118..3529494 (+) | 1377 | WP_283812195.1 | fimbria/pilus outer membrane usher protein | - |
| U2S90_RS16705 (U2S90_16695) | - | 3529494..3530012 (+) | 519 | WP_004245882.1 | fimbrial protein | - |
| U2S90_RS16710 (U2S90_16700) | - | 3530012..3531085 (+) | 1074 | WP_142836765.1 | fimbrial protein | - |
| U2S90_RS16715 (U2S90_16705) | - | 3531112..3531429 (+) | 318 | WP_004245886.1 | helix-turn-helix domain-containing protein | - |
| U2S90_RS16720 (U2S90_16710) | potD | 3531563..3532606 (-) | 1044 | WP_004245887.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| U2S90_RS16725 (U2S90_16715) | potC | 3532723..3533502 (-) | 780 | WP_004245888.1 | spermidine/putrescine ABC transporter permease PotC | - |
| U2S90_RS16730 (U2S90_16720) | potB | 3533499..3534359 (-) | 861 | WP_004250112.1 | spermidine/putrescine ABC transporter permease PotB | - |
| U2S90_RS16735 (U2S90_16725) | potA | 3534343..3535458 (-) | 1116 | WP_004245891.1 | spermidine/putrescine ABC transporter ATP-binding protein PotA | - |
| U2S90_RS16740 (U2S90_16730) | - | 3535902..3537176 (-) | 1275 | WP_004249170.1 | S8 family peptidase | - |
| U2S90_RS16745 (U2S90_16735) | - | 3537402..3538466 (-) | 1065 | WP_017628493.1 | Abi family protein | - |
| U2S90_RS16750 (U2S90_16740) | dusA | 3538899..3539933 (+) | 1035 | WP_004245894.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| U2S90_RS16755 (U2S90_16745) | - | 3540040..3541023 (-) | 984 | WP_004245895.1 | NADPH:quinone reductase | - |
| U2S90_RS16760 (U2S90_16750) | dnaB | 3541191..3542600 (+) | 1410 | WP_004245896.1 | replicative DNA helicase | - |
| U2S90_RS16765 (U2S90_16755) | alr | 3542641..3543732 (+) | 1092 | WP_004245898.1 | alanine racemase | - |
| U2S90_RS16770 (U2S90_16760) | - | 3543788..3544981 (+) | 1194 | WP_012368490.1 | amino acid aminotransferase | - |
| U2S90_RS16775 (U2S90_16765) | - | 3545103..3546452 (-) | 1350 | WP_004245900.1 | serine dehydratase subunit alpha family protein | - |
| U2S90_RS16780 (U2S90_16770) | - | 3546514..3547845 (-) | 1332 | WP_004249166.1 | amino acid permease | - |
| U2S90_RS16785 (U2S90_16775) | uvrA | 3548498..3551332 (-) | 2835 | WP_004249165.1 | excinuclease ABC subunit UvrA | - |
| U2S90_RS16790 (U2S90_16780) | ssb | 3551585..3552109 (+) | 525 | WP_004249162.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| U2S90_RS16795 (U2S90_16785) | zur | 3552451..3552981 (+) | 531 | WP_004245904.1 | zinc uptake transcriptional repressor Zur | - |
| U2S90_RS16800 (U2S90_16790) | lexA | 3553170..3553781 (-) | 612 | WP_004245906.1 | transcriptional repressor LexA | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18830.90 Da Isoelectric Point: 4.9468
>NTDB_id=914381 U2S90_RS16790 WP_004249162.1 3551585..3552109(+) (ssb) [Proteus mirabilis strain 2023CK-01118]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=914381 U2S90_RS16790 WP_004249162.1 3551585..3552109(+) (ssb) [Proteus mirabilis strain 2023CK-01118]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGCAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGCAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
71.892 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
57.065 |
100 |
0.603 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.489 |