Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABXJ15_RS09100 Genome accession   NZ_CP159700
Coordinates   1801229..1801765 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Z142-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1796229..1806765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ15_RS09080 (ABXJ15_09080) soxR 1797957..1798421 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ABXJ15_RS09085 (ABXJ15_09085) soxS 1798507..1798830 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABXJ15_RS09090 (ABXJ15_09090) pdeC 1798833..1800419 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  ABXJ15_RS09095 (ABXJ15_09095) yjcB 1800849..1801130 (+) 282 WP_001295689.1 YjcB family protein -
  ABXJ15_RS09100 (ABXJ15_09100) ssb 1801229..1801765 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABXJ15_RS09105 (ABXJ15_09105) uvrA 1802019..1804841 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABXJ15_RS09110 (ABXJ15_09110) yjbR 1804876..1805232 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABXJ15_RS09115 (ABXJ15_09115) yjbQ 1805236..1805652 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABXJ15_RS09120 (ABXJ15_09120) aphA 1805763..1806404 (-) 642 Protein_1774 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=914359 ABXJ15_RS09100 WP_000168305.1 1801229..1801765(-) (ssb) [Escherichia coli strain Z142-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=914359 ABXJ15_RS09100 WP_000168305.1 1801229..1801765(-) (ssb) [Escherichia coli strain Z142-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489