Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   U2S75_RS18225 Genome accession   NZ_CP140420
Coordinates   3816053..3816580 (-) Length   175 a.a.
NCBI ID   WP_024436689.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3811053..3821580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS18205 (U2S75_18200) - 3811242..3812117 (-) 876 WP_000218808.1 hypothetical protein -
  U2S75_RS18210 (U2S75_18205) aroB 3812133..3813215 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  U2S75_RS18215 (U2S75_18210) aroK 3813244..3813813 (-) 570 WP_000643712.1 shikimate kinase AroK -
  U2S75_RS18220 (U2S75_18215) pilQ 3813825..3815990 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  U2S75_RS18225 (U2S75_18220) pilP 3816053..3816580 (-) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  U2S75_RS18230 (U2S75_18225) pilO 3816591..3817331 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  U2S75_RS18235 (U2S75_18230) pilN 3817328..3817969 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  U2S75_RS18240 (U2S75_18235) pilM 3817969..3819027 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19433.66 Da        Isoelectric Point: 8.9898

>NTDB_id=914198 U2S75_RS18225 WP_024436689.1 3816053..3816580(-) (pilP) [Acinetobacter baumannii strain 2023CK-00893]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=914198 U2S75_RS18225 WP_024436689.1 3816053..3816580(-) (pilP) [Acinetobacter baumannii strain 2023CK-00893]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714