Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   U2S75_RS18235 Genome accession   NZ_CP140420
Coordinates   3817328..3817969 (-) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3812328..3822969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS18215 (U2S75_18210) aroK 3813244..3813813 (-) 570 WP_000643712.1 shikimate kinase AroK -
  U2S75_RS18220 (U2S75_18215) pilQ 3813825..3815990 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  U2S75_RS18225 (U2S75_18220) pilP 3816053..3816580 (-) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  U2S75_RS18230 (U2S75_18225) pilO 3816591..3817331 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  U2S75_RS18235 (U2S75_18230) pilN 3817328..3817969 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  U2S75_RS18240 (U2S75_18235) pilM 3817969..3819027 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  U2S75_RS18245 (U2S75_18240) ponA 3819189..3821744 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  U2S75_RS18250 (U2S75_18245) - 3821762..3822586 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  U2S75_RS18255 (U2S75_18250) - 3822589..3822921 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=914200 U2S75_RS18235 WP_000201226.1 3817328..3817969(-) (pilN) [Acinetobacter baumannii strain 2023CK-00893]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=914200 U2S75_RS18235 WP_000201226.1 3817328..3817969(-) (pilN) [Acinetobacter baumannii strain 2023CK-00893]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGTGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709