Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6450_RS17575 Genome accession   NZ_AP025340
Coordinates   3488142..3488654 (-) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus paralicheniformis strain J36TS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3483142..3493654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS17545 - 3483535..3483675 (-) 141 WP_020453636.1 hypothetical protein -
  L6450_RS17550 - 3483835..3484311 (+) 477 WP_020453637.1 spore coat protein -
  L6450_RS17555 - 3484354..3484773 (-) 420 WP_020453638.1 universal stress protein -
  L6450_RS17560 - 3484791..3486257 (-) 1467 WP_020453639.1 SulP family inorganic anion transporter -
  L6450_RS17565 - 3486472..3487773 (+) 1302 WP_020453640.1 MFS transporter -
  L6450_RS17570 rpsR 3487851..3488090 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  L6450_RS17575 ssbA 3488142..3488654 (-) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  L6450_RS17580 rpsF 3488701..3488988 (-) 288 WP_020453642.1 30S ribosomal protein S6 -
  L6450_RS17585 ychF 3489102..3490202 (-) 1101 WP_020453643.1 redox-regulated ATPase YchF -
  L6450_RS17590 - 3490384..3490590 (-) 207 WP_011201785.1 DUF951 domain-containing protein -
  L6450_RS17595 - 3490678..3491691 (-) 1014 WP_023856802.1 GerAB/ArcD/ProY family transporter -
  L6450_RS17600 yyaC 3491995..3492612 (+) 618 WP_020453645.1 spore protease YyaC -
  L6450_RS17605 - 3492649..3493497 (-) 849 WP_020453646.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=91419 L6450_RS17575 WP_003178024.1 3488142..3488654(-) (ssbA) [Bacillus paralicheniformis strain J36TS2]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=91419 L6450_RS17575 WP_003178024.1 3488142..3488654(-) (ssbA) [Bacillus paralicheniformis strain J36TS2]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCAAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCGAATTTCCTTAAAAAGGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAAGGACAGCGTGTATACGTTACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCAGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAGAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAACGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382

Multiple sequence alignment