Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   L6450_RS12880 Genome accession   NZ_AP025340
Coordinates   2525036..2525674 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain J36TS2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2520036..2530674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS12845 - 2521226..2521657 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  L6450_RS12850 - 2521657..2521998 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  L6450_RS12855 - 2521991..2523469 (+) 1479 WP_020452786.1 Na+/H+ antiporter subunit D -
  L6450_RS12860 - 2523475..2523951 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  L6450_RS12865 - 2523951..2524235 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  L6450_RS12870 mnhG 2524219..2524593 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  L6450_RS12875 - 2524630..2525019 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  L6450_RS12880 comA 2525036..2525674 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  L6450_RS12885 comP 2525761..2528076 (-) 2316 WP_020452789.1 sensor histidine kinase Regulator
  L6450_RS12890 comX 2528097..2528267 (-) 171 WP_020452790.1 competence pheromone ComX -
  L6450_RS12895 - 2528239..2529150 (-) 912 WP_020452791.1 polyprenyl synthetase family protein -
  L6450_RS12900 degQ 2529337..2529477 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  L6450_RS12905 - 2529963..2530310 (+) 348 WP_223254849.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=91402 L6450_RS12880 WP_003184849.1 2525036..2525674(-) (comA) [Bacillus paralicheniformis strain J36TS2]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=91402 L6450_RS12880 WP_003184849.1 2525036..2525674(-) (comA) [Bacillus paralicheniformis strain J36TS2]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment