Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABXJ28_RS09940 Genome accession   NZ_CP159641
Coordinates   1915152..1915688 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Z226-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1910152..1920688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ28_RS09920 (ABXJ28_09920) soxR 1911880..1912344 (-) 465 WP_172695352.1 redox-sensitive transcriptional activator SoxR -
  ABXJ28_RS09925 (ABXJ28_09925) soxS 1912430..1912753 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABXJ28_RS09930 (ABXJ28_09930) pdeC 1912756..1914342 (-) 1587 WP_172695351.1 c-di-GMP phosphodiesterase PdeC -
  ABXJ28_RS09935 (ABXJ28_09935) yjcB 1914772..1915053 (+) 282 WP_001295689.1 YjcB family protein -
  ABXJ28_RS09940 (ABXJ28_09940) ssb 1915152..1915688 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABXJ28_RS09945 (ABXJ28_09945) uvrA 1915942..1918764 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABXJ28_RS09950 (ABXJ28_09950) yjbR 1918799..1919155 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABXJ28_RS09955 (ABXJ28_09955) yjbQ 1919159..1919575 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABXJ28_RS09960 (ABXJ28_09960) - 1919686..1920021 (-) 336 Protein_1843 HAD family acid phosphatase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=913729 ABXJ28_RS09940 WP_000168305.1 1915152..1915688(-) (ssb) [Escherichia coli strain Z226-6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=913729 ABXJ28_RS09940 WP_000168305.1 1915152..1915688(-) (ssb) [Escherichia coli strain Z226-6]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GAGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489