Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABXJ18_RS21905 Genome accession   NZ_CP159636
Coordinates   4523941..4524477 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Z135-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4518941..4529477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ18_RS21885 (ABXJ18_21885) aphA 4519229..4519942 (+) 714 WP_001226933.1 acid phosphatase AphA -
  ABXJ18_RS21890 (ABXJ18_21890) yjbQ 4520053..4520469 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABXJ18_RS21895 (ABXJ18_21895) yjbR 4520473..4520829 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABXJ18_RS21900 (ABXJ18_21900) uvrA 4520864..4523686 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  ABXJ18_RS21905 (ABXJ18_21905) ssb 4523941..4524477 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABXJ18_RS21910 (ABXJ18_21910) yjcB 4524576..4524857 (-) 282 WP_001296643.1 YjcB family protein -
  ABXJ18_RS21915 (ABXJ18_21915) pdeC 4525286..4526872 (+) 1587 WP_001545711.1 c-di-GMP phosphodiesterase PdeC -
  ABXJ18_RS21920 (ABXJ18_21920) soxS 4526875..4527198 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABXJ18_RS21925 (ABXJ18_21925) soxR 4527284..4527748 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=913619 ABXJ18_RS21905 WP_000168305.1 4523941..4524477(+) (ssb) [Escherichia coli strain Z135-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=913619 ABXJ18_RS21905 WP_000168305.1 4523941..4524477(+) (ssb) [Escherichia coli strain Z135-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489