Detailed information NTG0913609

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: U3Q39_RS20095
• Genome accession: NZ_CP140298
• Coordinates: 4303940..4305085 (-)
• Length: 381 a.a.
• NCBI ID: WP_170799581.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain MJL19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4298940..4310085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U3Q39_RS20070 (U3Q39_020070)	-	4299017..4300033 (+)	1017	WP_011914964.1	aspartate carbamoyltransferase catalytic subunit	-
U3Q39_RS20075 (U3Q39_020075)	-	4300033..4301307 (+)	1275	WP_174861972.1	dihydroorotase	-
U3Q39_RS20080 (U3Q39_020080)	-	4301365..4301760 (-)	396	WP_011914966.1	NINE protein	-
U3Q39_RS20085 (U3Q39_020085)	-	4301896..4303110 (+)	1215	WP_013984321.1	putative DNA modification/repair radical SAM protein	-
U3Q39_RS20090 (U3Q39_020090)	-	4303110..4303943 (+)	834	WP_045159851.1	TIGR03915 family putative DNA repair protein	-
U3Q39_RS20095 (U3Q39_020095)	pilU	4303940..4305085 (-)	1146	WP_170799581.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
U3Q39_RS20100 (U3Q39_020100)	pilT	4305145..4306179 (-)	1035	WP_011914970.1	type IV pilus twitching motility protein PilT	Machinery gene
U3Q39_RS20105 (U3Q39_020105)	-	4306246..4306935 (+)	690	WP_043942282.1	YggS family pyridoxal phosphate-dependent enzyme	-
U3Q39_RS20110 (U3Q39_020110)	proC	4306946..4307770 (+)	825	WP_170799582.1	pyrroline-5-carboxylate reductase	-
U3Q39_RS20115 (U3Q39_020115)	-	4307780..4308370 (+)	591	WP_014598006.1	YggT family protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42536.85 Da
• Isoelectric Point: 6.8858

>NTDB_id=913609 U3Q39_RS20095 WP_170799581.1 4303940..4305085(-) (pilU) [Stutzerimonas stutzeri strain MJL19]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVSKTPMSPEMTRETVHGVMNEQQRREFTENHECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETNIPTIEELKLPDVLKKLSMTKRGLVLFVGATGTGKSTSLASMIGYRNKNSSGHIISIED
PIEFIHQHQNCIVTQREVGIDTSSFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLCLATLHANNANQALDRI
INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKSLMKRSTELGMQTFDQA
LYNLYVQGEITYEDALLHADSANDLRLLIKLGSETDGEHLASVSQGLSLEVSDEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=913609 U3Q39_RS20095 WP_170799581.1 4303940..4305085(-) (pilU) [Stutzerimonas stutzeri strain MJL19]
ATGGAATTCGAGAAACTTCTGCGCCTGATGGTCGAAAAAGGCGGCTCCGATCTGTTCATCACGGCTGGCGTGCCGCCGTC
GATGAAGGTCAACGGCAAGATCATGCCGGTGAGCAAGACGCCCATGTCGCCGGAGATGACCCGGGAAACCGTGCACGGCG
TGATGAACGAGCAGCAGCGCCGCGAGTTCACCGAGAACCACGAATGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGTGTCAGCGCGTTCTATCAGCGAAACCTGGCCGGCATGGTGCTGCGTCGCATCGAGACCAACATCCCGACCATCGA
AGAACTCAAGCTGCCGGACGTCCTGAAGAAGCTGTCGATGACCAAACGTGGTCTGGTGCTGTTCGTCGGCGCCACCGGTA
CCGGCAAGTCGACGTCGCTGGCCTCGATGATCGGCTACCGCAACAAGAACTCCAGCGGGCACATCATCTCCATCGAAGAC
CCGATCGAATTCATCCACCAGCACCAGAATTGCATCGTCACCCAGCGCGAAGTGGGCATCGACACCAGCTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGCGAGATCCGTACCCGCGAAACCATGGATTACG
CGGTCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGCCGGACCGGCACAACCAGGTCTGGATGGACCTGTCGCTCAACCTCAAGGCCATCGTTGCCCAGCA
GCTGGTTCCGACCCCGGACGGCAAGGGTCGTCGTGCGGTCATCGAGGTGCTGATCAATACGCCGCTGGCGGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAATCGCTGATGAAGCGCTCCACCGAGCTGGGTATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACGTGCAGGGCGAGATCACCTACGAAGATGCCCTGCTGCATGCTGACTCGGCCAACGATCTGCGACT
GCTGATCAAGCTGGGTTCGGAAACCGACGGTGAGCACCTGGCCAGCGTATCCCAGGGCCTGAGCCTGGAGGTCAGCGACG
AGGACCCGGGCCGGCGCTTCCGTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	94.751	100	0.948
pilU	Acinetobacter baylyi ADP1	66.106	93.701	0.619
pilU	Vibrio cholerae strain A1552	59.429	91.864	0.546
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.953	88.976	0.391