Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5R73_RS01065 Genome accession   NZ_CP140261
Coordinates   220811..221398 (+) Length   195 a.a.
NCBI ID   WP_322528502.1    Uniprot ID   -
Organism   Salinicola sp. LHM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 215811..226398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R73_RS01050 (R5R73_01050) rplQ 215817..216203 (+) 387 WP_071230729.1 50S ribosomal protein L17 -
  R5R73_RS01055 (R5R73_01055) uvrA 216381..219233 (-) 2853 WP_322528500.1 excinuclease ABC subunit UvrA -
  R5R73_RS01060 (R5R73_01060) - 219394..220776 (+) 1383 WP_322528501.1 MFS transporter -
  R5R73_RS01065 (R5R73_01065) ssb 220811..221398 (+) 588 WP_322528502.1 single-stranded DNA-binding protein Machinery gene
  R5R73_RS01070 (R5R73_01070) - 221749..223836 (+) 2088 WP_322528503.1 OPT family oligopeptide transporter -
  R5R73_RS01075 (R5R73_01075) - 223845..224726 (-) 882 WP_322528504.1 SMP-30/gluconolactonase/LRE family protein -
  R5R73_RS01080 (R5R73_01080) - 224923..225837 (+) 915 WP_322528505.1 sugar nucleotide-binding protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21670.64 Da        Isoelectric Point: 5.2421

>NTDB_id=913307 R5R73_RS01065 WP_322528502.1 220811..221398(+) (ssb) [Salinicola sp. LHM]
MARGVNKVILIGNLGQDPEVRFLPSGNPVCNLRIATTDSWTDRQSGQRQERTEWHTVVLFNKLAEIAQQYVKKGSRIYIE
GRLQTRKWQGQDGQDRYSTEIVGNDMQMLDSRGGGGDYAQPQGQYGGAPQDSYGQQAQQGNYGGNPQPQQRPPQSGQPQQ
RPPQQGQPAPQPNQNPNYGAPNPGSFDDFDDEIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=913307 R5R73_RS01065 WP_322528502.1 220811..221398(+) (ssb) [Salinicola sp. LHM]
ATGGCCAGAGGTGTAAACAAAGTCATCCTGATCGGCAACCTGGGACAGGATCCGGAAGTCCGCTTTCTGCCTTCGGGGAA
TCCGGTGTGCAACCTGCGCATCGCCACGACCGATAGCTGGACCGACCGTCAGAGCGGCCAGCGCCAGGAACGCACGGAAT
GGCACACCGTGGTGCTGTTCAACAAGCTGGCGGAAATCGCCCAGCAGTACGTGAAGAAAGGGTCGCGTATCTATATCGAA
GGCCGGCTGCAGACCCGTAAATGGCAGGGGCAGGACGGTCAGGATCGCTATTCGACCGAAATCGTCGGCAACGACATGCA
GATGCTGGATTCCCGAGGCGGCGGCGGTGACTATGCGCAGCCCCAGGGGCAGTACGGCGGCGCGCCGCAGGATAGTTACG
GTCAGCAGGCGCAGCAGGGCAACTATGGCGGCAATCCGCAGCCACAGCAGCGCCCGCCGCAGTCAGGGCAGCCGCAACAG
CGTCCACCGCAGCAGGGGCAGCCGGCGCCACAGCCCAACCAGAACCCCAACTACGGCGCTCCCAATCCGGGCAGCTTCGA
CGATTTCGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.261

100

0.533
  ssb Glaesserella parasuis strain SC1401

46.392

99.487

0.462
  ssb Neisseria gonorrhoeae MS11

46.632

98.974

0.462
  ssb Neisseria meningitidis MC58

46.114

98.974

0.456