Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SR908_RS09465 Genome accession   NZ_CP140151
Coordinates   1974225..1974779 (+) Length   184 a.a.
NCBI ID   WP_075369404.1    Uniprot ID   A0A285VVA5
Organism   Chromohalobacter canadensis strain ATCC 43984     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1969225..1979779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR908_RS09455 (SR908_09455) uvrA 1969694..1972564 (-) 2871 WP_246924438.1 excinuclease ABC subunit UvrA -
  SR908_RS09460 (SR908_09460) - 1972809..1974191 (+) 1383 WP_246924441.1 MFS transporter -
  SR908_RS09465 (SR908_09465) ssb 1974225..1974779 (+) 555 WP_075369404.1 single-stranded DNA-binding protein Machinery gene
  SR908_RS09470 (SR908_09470) norR 1974879..1976447 (-) 1569 WP_246924444.1 nitric oxide reductase transcriptional regulator NorR -
  SR908_RS09475 (SR908_09475) hmpA 1976700..1977881 (+) 1182 WP_246924447.1 NO-inducible flavohemoprotein -
  SR908_RS09480 (SR908_09480) - 1978038..1978832 (-) 795 WP_246924450.1 2OG-Fe dioxygenase family protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20275.16 Da        Isoelectric Point: 4.9160

>NTDB_id=913065 SR908_RS09465 WP_075369404.1 1974225..1974779(+) (ssb) [Chromohalobacter canadensis strain ATCC 43984]
MARGVNKVILIGNLGQDPEVRFLPSGNPVCNLRIATTDTWTDRQSGQRQERTEWHTVVMFNKLAEIAQQYVKKGSRIYVE
GRLQTRKWQGQDGQDRYSTEIVANDMQMLDSRSGQGGGDYAQPSQNAPQQGGAAQQGSYGQPQGGPPPQQQAPQQQPPQQ
GGQQGNYGAPNPGNFDDFDDEIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=913065 SR908_RS09465 WP_075369404.1 1974225..1974779(+) (ssb) [Chromohalobacter canadensis strain ATCC 43984]
ATGGCGCGCGGCGTGAACAAGGTCATCCTGATCGGCAATCTCGGTCAGGATCCAGAAGTCCGCTTTCTGCCTTCCGGCAA
TCCGGTGTGCAATCTACGCATCGCCACTACCGATACCTGGACCGACCGTCAGAGTGGTCAGCGCCAGGAGCGTACCGAAT
GGCACACGGTGGTGATGTTCAACAAGCTGGCGGAAATCGCCCAGCAGTATGTGAAGAAAGGCTCTCGTATCTATGTCGAG
GGCCGCCTGCAGACGCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGGTACTCTACCGAGATCGTCGCCAACGACATGCA
GATGCTCGACTCGCGTAGCGGCCAGGGTGGCGGTGATTACGCCCAGCCCTCGCAAAATGCGCCTCAGCAAGGTGGTGCGG
CGCAGCAGGGCAGCTACGGCCAGCCACAGGGTGGCCCGCCTCCACAGCAGCAGGCACCTCAGCAACAGCCGCCCCAGCAG
GGTGGGCAGCAAGGTAATTATGGTGCCCCTAACCCTGGCAATTTCGACGACTTCGACGATGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A285VVA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.211

100

0.56
  ssb Neisseria meningitidis MC58

48.677

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.663

100

0.495
  ssb Glaesserella parasuis strain SC1401

44.67

100

0.478