Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U1R68_RS03755 Genome accession   NZ_CP140126
Coordinates   847906..848445 (-) Length   179 a.a.
NCBI ID   WP_225085724.1    Uniprot ID   -
Organism   Pectobacterium colocasium strain MT27-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 842906..853445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R68_RS03750 (U1R68_03730) - 847015..847296 (-) 282 WP_225085725.1 hypothetical protein -
  U1R68_RS03755 (U1R68_03735) ssb 847906..848445 (-) 540 WP_225085724.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U1R68_RS03760 (U1R68_03740) uvrA 848690..851524 (+) 2835 WP_350238686.1 excinuclease ABC subunit UvrA -
  U1R68_RS03765 (U1R68_03745) - 851541..851960 (+) 420 WP_225085722.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U1R68_RS03770 (U1R68_03750) vapB 852223..852450 (+) 228 WP_225085721.1 type II toxin-antitoxin system VapB family antitoxin -
  U1R68_RS03775 (U1R68_03755) - 852447..852863 (+) 417 WP_225085720.1 type II toxin-antitoxin system VapC family toxin -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18945.90 Da        Isoelectric Point: 5.2456

>NTDB_id=912972 U1R68_RS03755 WP_225085724.1 847906..848445(-) (ssb) [Pectobacterium colocasium strain MT27-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQGGWGQPQQPQGGNQFSGGAQSQQRPAQN
STPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=912972 U1R68_RS03755 WP_225085724.1 847906..848445(-) (ssb) [Pectobacterium colocasium strain MT27-1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
CGGTGCAGTTGCCAACATTACGCTGGCGACGTCAGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACTG
AGTGGCACCGCGTGGTGCTGTTCGGCAAACTGGCAGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAATGTCGG
CGGCACCATGCAGATGTTAGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGCCAAGGCG
GTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAGCAACGCCCAGCGCAAAAT
AGCACGCCAGCACAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.76
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.603
  ssb Neisseria meningitidis MC58

46.067

99.441

0.458
  ssb Neisseria gonorrhoeae MS11

46.067

99.441

0.458