Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U1R71_RS21855 Genome accession   NZ_CP140123
Coordinates   4087625..4088143 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SJTU2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4082625..4093143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS21830 (U1R71_21830) - 4082885..4083913 (+) 1029 WP_014481504.1 AAA family ATPase -
  U1R71_RS21835 (U1R71_21835) - 4083891..4085165 (+) 1275 WP_014481505.1 MFS transporter -
  U1R71_RS21840 (U1R71_21840) - 4086070..4086459 (-) 390 Protein_4244 LacI family DNA-binding transcriptional regulator -
  U1R71_RS21845 (U1R71_21845) xth 4086519..4087277 (-) 759 WP_014481508.1 exodeoxyribonuclease III -
  U1R71_RS21850 (U1R71_21850) rpsR 4087342..4087581 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  U1R71_RS21855 (U1R71_21855) ssbA 4087625..4088143 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  U1R71_RS21860 (U1R71_21860) rpsF 4088184..4088471 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  U1R71_RS21865 (U1R71_21865) ychF 4088582..4089682 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  U1R71_RS21870 (U1R71_21870) yyaE 4089809..4091812 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  U1R71_RS21875 (U1R71_21875) yyzM 4091863..4092069 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=912966 U1R71_RS21855 WP_003219228.1 4087625..4088143(-) (ssbA) [Bacillus subtilis strain SJTU2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=912966 U1R71_RS21855 WP_003219228.1 4087625..4088143(-) (ssbA) [Bacillus subtilis strain SJTU2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378