Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L6445_RS25435 Genome accession   NZ_AP025334
Coordinates   5298958..5299494 (-) Length   178 a.a.
NCBI ID   WP_039077898.1    Uniprot ID   -
Organism   Phytobacter diazotrophicus strain TA9734     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5293958..5304494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6445_RS25415 (PDTA9734_50370) soxS 5294294..5294617 (+) 324 WP_125125504.1 superoxide response transcriptional regulator SoxS -
  L6445_RS25420 (PDTA9734_50380) - 5294633..5296204 (-) 1572 WP_039077895.1 EAL domain-containing protein -
  L6445_RS25425 (PDTA9734_50390) - 5296545..5297948 (-) 1404 WP_071194347.1 sensor domain-containing diguanylate cyclase -
  L6445_RS25430 (PDTA9734_50400) - 5298502..5298783 (+) 282 WP_039077897.1 YjcB family protein -
  L6445_RS25435 (PDTA9734_50410) ssb 5298958..5299494 (-) 537 WP_039077898.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L6445_RS25440 (PDTA9734_50420) uvrA 5299746..5302571 (+) 2826 WP_039077899.1 excinuclease ABC subunit UvrA -
  L6445_RS25445 (PDTA9734_50430) - 5302585..5302953 (-) 369 WP_125125505.1 MmcQ/YjbR family DNA-binding protein -
  L6445_RS25450 (PDTA9734_50440) - 5302956..5303372 (-) 417 WP_039077901.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L6445_RS25455 (PDTA9734_50450) aphA 5303476..5304180 (-) 705 WP_039077902.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18881.93 Da        Isoelectric Point: 5.2456

>NTDB_id=91280 L6445_RS25435 WP_039077898.1 5298958..5299494(-) (ssb) [Phytobacter diazotrophicus strain TA9734]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQGQQGGWGQPQQPQGGNQFSGGAQSRPQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=91280 L6445_RS25435 WP_039077898.1 5298958..5299494(-) (ssb) [Phytobacter diazotrophicus strain TA9734]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCGACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTCTACATT
GAGGGTCAATTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCCGAGAAATACACCACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGTGGCCGTCAGGGTGGCGGTGCTCCGGCTGGCGGCAATATGGGCGGCGGCCAGGGCCAGC
AGGGCGGTTGGGGCCAACCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCACAGCAGTCT
GCGCCGGCACCGTCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.758
  ssb Glaesserella parasuis strain SC1401

56.383

100

0.596
  ssb Neisseria meningitidis MC58

46.154

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.472

Multiple sequence alignment