Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6411_RS08130 Genome accession   NZ_AP025333
Coordinates   1691914..1692405 (-) Length   163 a.a.
NCBI ID   WP_024533052.1    Uniprot ID   A0A2Z5TQ12
Organism   Streptococcus ruminantium strain GUT-189     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1686914..1697405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS08115 (GUT189_15640) - 1687837..1688490 (+) 654 WP_155964289.1 DUF1129 domain-containing protein -
  L6411_RS10030 - 1688662..1690074 (-) 1413 WP_419579982.1 pneumococcal-type histidine triad protein -
  L6411_RS10035 - 1690050..1691169 (-) 1120 Protein_1565 pneumococcal-type histidine triad protein -
  L6411_RS08125 (GUT189_15660) rpsR 1691524..1691763 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  L6411_RS08130 (GUT189_15670) ssbA 1691914..1692405 (-) 492 WP_024533052.1 single-stranded DNA-binding protein Machinery gene
  L6411_RS08135 (GUT189_15680) rpsF 1692417..1692707 (-) 291 WP_024533051.1 30S ribosomal protein S6 -
  L6411_RS08140 (GUT189_15690) - 1692866..1693855 (-) 990 WP_024533050.1 lipoate--protein ligase -
  L6411_RS08145 (GUT189_15700) - 1693938..1695377 (-) 1440 WP_237374055.1 6-phospho-beta-glucosidase -
  L6411_RS08150 (GUT189_15710) - 1695432..1696037 (-) 606 WP_237374056.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18098.83 Da        Isoelectric Point: 4.7294

>NTDB_id=91252 L6411_RS08130 WP_024533052.1 1691914..1692405(-) (ssbA) [Streptococcus ruminantium strain GUT-189]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRSVREGQGGYSTGSSFAGGNDYNSSYQAPSQSTPNFAREESPFGTSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=91252 L6411_RS08130 WP_024533052.1 1691914..1692405(-) (ssbA) [Streptococcus ruminantium strain GUT-189]
ATGATAAATAATGTAGTATTGGTTGGTCGTATGACCCGCGATGCAGAACTTCGTTACACCCCGTCTAATCAGGCTGTTGC
GACTTTTACTTTAGCGGTCAACCGTAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTGATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAGAAAGGTGCACTGATTGGTGTTACAGGTCGTATCCAGACCCGT
AGTTATGATAATCAACAAGGGCAACGTGTCTACGTTACAGAAGTCGTTGCAGAAAGTTTTCAACTTCTTGAGAGTCGCTC
TGTTCGTGAAGGACAAGGCGGTTATTCTACTGGTTCTTCATTTGCTGGGGGAAATGATTATAACTCATCTTATCAAGCAC
CATCACAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGGACAAGCAATCCGATGGACATATCAGACGATGAC
CTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5TQ12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.583
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

65.031

0.362

Multiple sequence alignment