Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0028_RS02815 Genome accession   NZ_CP140007
Coordinates   623583..624134 (+) Length   183 a.a.
NCBI ID   WP_016497749.1    Uniprot ID   A0A0Q4N073
Organism   Pseudomonas putida strain HAMBI_0006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 618583..629134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0028_RS02800 (U0028_02800) bfr 618679..619143 (+) 465 WP_003257116.1 bacterioferritin -
  U0028_RS02805 (U0028_02805) uvrA 619215..622049 (-) 2835 WP_049275099.1 excinuclease ABC subunit UvrA -
  U0028_RS02810 (U0028_02810) - 622179..623573 (+) 1395 WP_016497748.1 MFS transporter -
  U0028_RS02815 (U0028_02815) ssb 623583..624134 (+) 552 WP_016497749.1 single-stranded DNA-binding protein Machinery gene
  U0028_RS02820 (U0028_02820) - 624205..624693 (-) 489 WP_080889261.1 GlcG/HbpS family heme-binding protein -
  U0028_RS02825 (U0028_02825) fdnG 625015..628083 (+) 3069 WP_152906044.1 formate dehydrogenase-N subunit alpha -
  U0028_RS02830 (U0028_02830) fdxH 628083..629033 (+) 951 WP_016497754.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20301.40 Da        Isoelectric Point: 5.9286

>NTDB_id=912379 U0028_RS02815 WP_016497749.1 623583..624134(+) (ssb) [Pseudomonas putida strain HAMBI_0006]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=912379 U0028_RS02815 WP_016497749.1 623583..624134(+) (ssb) [Pseudomonas putida strain HAMBI_0006]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCCGGCGAGTATCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCGCAAGGCCAGCAGCAAGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AGGGTGGCGGCCAGCAGCAACAGTACAACCAGGCACCGCCTCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGC
CCAGCGCCCCAGCAGCCTGCACCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q4N073

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.216

100

0.568
  ssb Glaesserella parasuis strain SC1401

48.969

100

0.519
  ssb Neisseria meningitidis MC58

48.108

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.486